Locus 58

Sequence ID Bsubt.0
Location 119,864 – 119,977
Length 113
Max. P 0.999745
window380 window381 window382 window383

overview

Window 0

Location 119,864 – 119,977
Length 113
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 66.95
Mean single sequence MFE -34.90
Consensus MFE -23.11
Energy contribution -22.18
Covariance contribution -0.94
Combinations/Pair 1.45
Mean z-score -2.25
Structure conservation index 0.66
SVM decision value 3.54
SVM RNA-class probability 0.999358
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 119864 113 + 4214630/0-120
UAUACCGUAGACAGUAGGGGCCUA-ACCGCUUAAUUAUCCUACCGAGGU--GUAUAU-UAUCACAGCU--AUUACGUUACGUAUGCUUGUAUAUACAGCCUCCAUGUCU-CAUGGAGGCU
....(((((((((((((((((...-...))).......))))).(((((--((((((-...((.(((.--..((((...)))).))))).))))))).))))..)))))-.))))..... ( -33.11)
>Blich.0 118834 114 + 4222334/0-120
UAUACCGUAGACAGUAGGUGCUGAUAAGGCUUAAUU-UCCUACCGAGGU--GUAUAUAUAUCACAGCU--CUAGCGUUACGUAUGCUUGUAUAUACAGCCUCCAUGUCG-AAUGGAGGCU
......(((.((((((((.(((.....)))......-.))))).(((.(--((.........))).))--).(((((.....))))))))...)))(((((((((....-.))))))))) ( -34.00)
>Bhalo.0 151918 108 + 4202352/0-120
CAUACCGUAGACAGUAGGUGCGUGAUUCGCUUAAUU-UCCUACCGAGGUAAGCAAAUAGAUGAAAGUC--UU----UUGACUGGACUCGUAU-----GCCCUCAUGUCUGCAUGGGGGCA
.((((........(((((.(((.....)))......-.))))).(((...((((((.((((....)))--))----))).))...)))))))-----(((((((((....))))))))). ( -38.30)
>Bclau.0 167882 111 + 4303871/0-120
CAUACCGUAGACAGCAGGUGCUUC-AUAGCUUAAAUAUCCUGCCGAGGUGAGCGAAUAGAUCUCUUUUUACUAGAGCUUAAAGCCCUCGUGU-----GUCUUCGUGCC---ACGAGGGCU
...(((...(...(((((.(((..-..)))........))))))..)))((((...(((...........)))..))))..((((((((((.-----((......)))---))))))))) ( -34.20)
>consensus
CAUACCGUAGACAGUAGGUGCUUA_AUCGCUUAAUU_UCCUACCGAGGU__GCAAAUAGAUCACAGCU__CUAGCGUUAAGUAUGCUCGUAU_____GCCUCCAUGUCU_CAUGGAGGCU
..((((...(...(((((.(((.....)))........))))))..))))...............................................(((((((((....))))))))). (-23.11 = -22.18 +  -0.94)

alignment

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secondary structure

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dotplot

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Window 1

Location 119,864 – 119,977
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 66.95
Mean single sequence MFE -32.15
Consensus MFE -19.75
Energy contribution -19.25
Covariance contribution -0.50
Combinations/Pair 1.22
Mean z-score -1.92
Structure conservation index 0.61
SVM decision value 2.41
SVM RNA-class probability 0.993593
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 119864 113 + 4214630/0-120
AGCCUCCAUG-AGACAUGGAGGCUGUAUAUACAAGCAUACGUAACGUAAU--AGCUGUGAUA-AUAUAC--ACCUCGGUAGGAUAAUUAAGCGGU-UAGGCCCCUACUGUCUACGGUAUA
((((((((((-...))))))))))(((((((((.((.((((...))))..--.)))))....-))))))--(((.(((((((.((((......))-))....))))))).....)))... ( -34.30)
>Blich.0 118834 114 + 4222334/0-120
AGCCUCCAUU-CGACAUGGAGGCUGUAUAUACAAGCAUACGUAACGCUAG--AGCUGUGAUAUAUAUAC--ACCUCGGUAGGA-AAUUAAGCCUUAUCAGCACCUACUGUCUACGGUAUA
(((((((((.-....)))))))))((((........)))).....(((.(--((.((((.......)))--).)))((((((.-........)))))))))...(((((....))))).. ( -30.90)
>Bhalo.0 151918 108 + 4202352/0-120
UGCCCCCAUGCAGACAUGAGGGC-----AUACGAGUCCAGUCAA----AA--GACUUUCAUCUAUUUGCUUACCUCGGUAGGA-AAUUAAGCGAAUCACGCACCUACUGUCUACGGUAUG
(((((.((((....)))).))))-----)...((....((((..----..--))))....))........((((.(((((((.-......(((.....))).))))))).....)))).. ( -28.80)
>Bclau.0 167882 111 + 4303871/0-120
AGCCCUCGU---GGCACGAAGAC-----ACACGAGGGCUUUAAGCUCUAGUAAAAAGAGAUCUAUUCGCUCACCUCGGCAGGAUAUUUAAGCUAU-GAAGCACCUGCUGUCUACGGUAUG
(((((((((---(..........-----.)))))))))).....((((.......))))............(((.(((((((...((((.....)-)))...))))))).....)))... ( -34.60)
>consensus
AGCCCCCAUG_AGACAUGAAGGC_____AUACAAGCACACGUAACGCUAG__AACUGUGAUAUAUAUAC__ACCUCGGUAGGA_AAUUAAGCGAU_UAAGCACCUACUGUCUACGGUAUA
.((((((((......))))))))................................................(((.(((((((....................))))))).....)))... (-19.75 = -19.25 +  -0.50)

alignment

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secondary structure

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dotplot

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Window 2

Location 119,864 – 119,977
Length 113
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 64.67
Mean single sequence MFE -35.28
Consensus MFE -22.81
Energy contribution -21.18
Covariance contribution -1.62
Combinations/Pair 1.48
Mean z-score -2.53
Structure conservation index 0.65
SVM decision value 3.99
SVM RNA-class probability 0.999745
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 119864 113 + 4214630/12-132
AGUAGGGGCCUA-ACCGCUUAAUUAUCCUACCGAGGU--GUAUAU-UAUCACAGCU--AUUACGUUACGUAUGCUUGUAUAUACAGCCUCCAUGUCU-CAUGGAGGCUUUUUAUAUGGAA
.((((((((...-...))).......))))).....(--((((((-...((.(((.--..((((...)))).))))).)))))))(((((((((...-)))))))))............. ( -31.81)
>Blich.0 118834 114 + 4222334/12-132
AGUAGGUGCUGAUAAGGCUUAAUU-UCCUACCGAGGU--GUAUAUAUAUCACAGCU--CUAGCGUUACGUAUGCUUGUAUAUACAGCCUCCAUGUCG-AAUGGAGGCUUUUUAUAUGGAA
.(((((.(((.....)))......-.))))).(((.(--((.........))).))--)..((((.....))))(..((((...(((((((((....-.)))))))))...))))..).. ( -34.20)
>Bhalo.0 151918 108 + 4202352/12-132
AGUAGGUGCGUGAUUCGCUUAAUU-UCCUACCGAGGUAAGCAAAUAGAUGAAAGUC--UU----UUGACUGGACUCGUAU-----GCCCUCAUGUCUGCAUGGGGGCAUUUUCGUUGGCC
.(((((.(((.....)))......-.)))))((((...((((((.((((....)))--))----))).))...)))).((-----(((((((((....)))))))))))........... ( -39.30)
>Bclau.0 167882 110 + 4303871/12-132
AGCAGGUGCUUC-AUAGCUUAAAUAUCCUGCCGAGGUGAGCGAAUAGAUCUCUUUUUACUAGAGCUUAAAGCCCUCGUGU-----GUCUUCGUGCC---ACGAGGGCUUUUC-UAUGGAA
.(((((.(((..-..)))........))))).(((((..........)))))......(((.((...((((((((((((.-----((......)))---))))))))))).)-).))).. ( -35.80)
>consensus
AGUAGGUGCUUA_AUCGCUUAAUU_UCCUACCGAGGU__GCAAAUAGAUCACAGCU__CUAGCGUUAAGUAUGCUCGUAU_____GCCUCCAUGUCU_CAUGGAGGCUUUUUAUAUGGAA
.(((((.(((.....)))........)))))((((......................................))))........(((((((((....)))))))))............. (-22.81 = -21.18 +  -1.62)

alignment

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secondary structure

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dotplot

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Window 3

Location 119,864 – 119,977
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 64.67
Mean single sequence MFE -31.15
Consensus MFE -15.62
Energy contribution -15.12
Covariance contribution -0.50
Combinations/Pair 1.29
Mean z-score -2.61
Structure conservation index 0.50
SVM decision value 3.00
SVM RNA-class probability 0.998078
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 119864 113 + 4214630/12-132
UUCCAUAUAAAAAGCCUCCAUG-AGACAUGGAGGCUGUAUAUACAAGCAUACGUAACGUAAU--AGCUGUGAUA-AUAUAC--ACCUCGGUAGGAUAAUUAAGCGGU-UAGGCCCCUACU
............((((((((((-...))))))))))(((((((((.((.((((...))))..--.)))))....-))))))--.....((((((.((((......))-))....)))))) ( -30.30)
>Blich.0 118834 114 + 4222334/12-132
UUCCAUAUAAAAAGCCUCCAUU-CGACAUGGAGGCUGUAUAUACAAGCAUACGUAACGCUAG--AGCUGUGAUAUAUAUAC--ACCUCGGUAGGA-AAUUAAGCCUUAUCAGCACCUACU
....(((((...(((((((((.-....))))))))).)))))...............(((.(--((.((((.......)))--).)))((((((.-........)))))))))....... ( -29.60)
>Bhalo.0 151918 108 + 4202352/12-132
GGCCAACGAAAAUGCCCCCAUGCAGACAUGAGGGC-----AUACGAGUCCAGUCAA----AA--GACUUUCAUCUAUUUGCUUACCUCGGUAGGA-AAUUAAGCGAAUCACGCACCUACU
((((.((....((((((.((((....)))).))))-----)).((((...((.(((----((--((......))).))))))...)))))).)).-......(((.....))).)).... ( -28.90)
>Bclau.0 167882 110 + 4303871/12-132
UUCCAUA-GAAAAGCCCUCGU---GGCACGAAGAC-----ACACGAGGGCUUUAAGCUCUAGUAAAAAGAGAUCUAUUCGCUCACCUCGGCAGGAUAUUUAAGCUAU-GAAGCACCUGCU
....(((-(((((((((((((---(..........-----.))))))))))))...((((.......)))).)))))...........((((((...((((.....)-)))...)))))) ( -35.80)
>consensus
UUCCAUAUAAAAAGCCCCCAUG_AGACAUGAAGGC_____AUACAAGCACACGUAACGCUAG__AACUGUGAUAUAUAUAC__ACCUCGGUAGGA_AAUUAAGCGAU_UAAGCACCUACU
.............((((((((......)))))))).....................................................((((((....................)))))) (-15.62 = -15.12 +  -0.50)

alignment

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secondary structure

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dotplot

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Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:20:40 2006