Locus 40

Sequence ID	Banth.0
Location	746,375 – 746,421
Length	46
Max. P	0.999675

overview

Window 9

Location	746,375 – 746,421
Length	46
Sequences	5
Columns	46
Reading direction	reverse
Mean pairwise identity	96.52
Mean single sequence MFE	-13.76
Consensus MFE	-14.24
Energy contribution	-13.76
Covariance contribution	-0.48
Combinations/Pair	1.10
Mean z-score	-2.04
Structure conservation index	1.03
SVM decision value	3.87
SVM RNA-class probability	0.999675
Prediction	RNA
WARNING	Sequence 1 too short.
WARNING	Sequence 2 too short.
WARNING	Sequence 3 too short.
WARNING	Sequence 4 too short.
WARNING	Sequence 5 too short.

Download alignment: ClustalW | MAF

>Banth.0 746375 46 + 5227293
CCCCCUGCUUGUAAGGCAGGUGCUCUCCCAGCUGAGCUAAUCCUCC
...((((((.....)))))).((((........))))......... ( -14.40)
>Bcere.0 822976 46 + 5224283
CCCCCUGCUUGUAAGGCAGGUGCUCUCCCAGCUGAGCUAAUCCUCC
...((((((.....)))))).((((........))))......... ( -14.40)
>Bhalo.0 123397 46 + 4202352
CCCCCUGCUUGUAAGGCAGGUGCUCUCCCAGCUGAGCUAACCCUCC
...((((((.....)))))).((((........))))......... ( -14.40)
>Bsubt.0 95368 46 + 4214630
CCCUCUGCUUGUAAGGCAGAUGCUCUCCCAGCUGAGCUAAUCCUCC
...((((((.....)))))).((((........))))......... ( -12.80)
>Bclau.0 141829 46 + 4303871
CCCUCUGCUUGUAAGGCAGAUGCUCUCCCAGCUGAGCUAAUCCUCC
...((((((.....)))))).((((........))))......... ( -12.80)
>consensus
CCCCCUGCUUGUAAGGCAGGUGCUCUCCCAGCUGAGCUAAUCCUCC
...((((((.....)))))).((((........))))......... (-14.24 = -13.76 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:19:13 2006