Locus 39

Sequence ID Banth.0
Location 537,146 – 537,266
Length 120
Max. P 0.936024
window268

overview

Window 8

Location 537,146 – 537,266
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.25
Mean single sequence MFE -46.82
Consensus MFE -45.80
Energy contribution -42.36
Covariance contribution -3.44
Combinations/Pair 1.29
Mean z-score -1.53
Structure conservation index 0.98
SVM decision value 1.25
SVM RNA-class probability 0.936024
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 537146 120 + 5227293/0-120
GUCUGGUAAUGAUGGCAGAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUCUAGCGCCGAUGGUAGUUGGGACCUUGUCCCUGUGAGAGUAGGACGUUGCCAGGCAAU
(((((((((((((((..(((.((......)).))))))).((....((....))...((((((.((((((...))).)))(((((...)))))...)))))).)).)))))))))))... ( -42.90)
>Bcere.0 609649 120 + 5224283/0-120
GUCUGGUAAUGAUGGCAGAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUCUAGCGCCGAUGGUAGUUGGGACCUUGUCCCUGUGAGAGUAGGACGUUGCCAGGCAAU
(((((((((((((((..(((.((......)).))))))).((....((....))...((((((.((((((...))).)))(((((...)))))...)))))).)).)))))))))))... ( -42.90)
>Blich.0 925309 120 + 4222334/0-120
GUCUGGUGAUGAUGGCGAAGAGGUCACACCCGUUCCCAUGCCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGCGAGAGUAGGACAUCGCCAGGCAGG
(((((((((((((((.(((..((.....))..))))))).(((....)))..(..((((.((((((((((...))).)))))))))))..)(((((....))))).)))))))))))... ( -51.90)
>Bsubt.0 950789 120 + 4214630/0-120
GUCUGGUGAUGAUGGCGAAGAGGUCACACCCGUUCCCAUGCCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUCGGGGGUUUCCCCCUGUGAGAGUAGGACAUCGCCAGGCAGA
(((((((((((((((.(((..((.....))..))))))).((....((....))...(((((((((..(((((....)))))(((....)))))).)))))).)).)))))))))))... ( -49.50)
>Bclau.0 148115 120 + 4303871/0-120
GUCCGGUGACAAUGGCAAAGAGGUCACACCCGUUCCCAUGCCGAACACGGCCGUUAAGCUCUUUUGCGCCGAUGGUAGUUGGAGGCUUCCUCCCGCGAGAGUAGGACGUUGCCGGGCAAC
((((((..((.((((....(.((.....)))....))))((((....)))).(((..((((((....(((...))).((.(((((...))))).))))))))..)))))..))))))... ( -46.90)
>consensus
GUCUGGUGAUGAUGGCAAAGAGGUCACACCCGUUCCCAUGCCGAACACGGAAGUUAAGCUCUUUAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGUGAGAGUAGGACGUUGCCAGGCAAU
((((((((((.((((.((.(.((.....))).)).)))).(((....)))..(((..((((((..(((((...)))....(((((...))))).))))))))..)))))))))))))... (-45.80 = -42.36 +  -3.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:19:12 2006