Locus 23

Sequence ID	Banth.0
Location	87,091 – 87,209
Length	118
Max. P	0.916980

overview

Window 8

Location	87,091 – 87,209
Length	118
Sequences	6
Columns	118
Reading direction	forward
Mean pairwise identity	88.36
Mean single sequence MFE	-46.04
Consensus MFE	-44.87
Energy contribution	-41.48
Covariance contribution	-3.38
Combinations/Pair	1.31
Mean z-score	-1.36
Structure conservation index	0.97
SVM decision value	1.11
SVM RNA-class probability	0.916980
Prediction	RNA

Download alignment: ClustalW | MAF

>Banth.0 87091 118 + 5227293
GUUUGGUGAUGAUGGCAGAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUCUAGCGCCGAUGGUAGUUGGGACCUUGUCCCUGUGAGAGUAGGACGUCGCCAAGCA
(((((((((((((((..(((.((......)).))))))).((....((....))...((((((.((((((...))).)))(((((...)))))...)))))).)).))))))))))). ( -42.70)
>Bcere.0 87092 118 + 5224283
GUUUGGUGAUGAUGGCAGAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUCUAGCGCCGAUGGUAGUUGGGACCUUGUCCCUGUGAGAGUAGGACGUCGCCAAGCA
(((((((((((((((..(((.((......)).))))))).((....((....))...((((((.((((((...))).)))(((((...)))))...)))))).)).))))))))))). ( -42.70)
>Bsubt.0 95232 118 + 4214630
GUUUGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUCGGGGGUUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCA
(((((((((((...((((((((.........((((.......))))((....))....)))))).)).(((((....)))(((((...)))))..........)).))))))))))). ( -47.90)
>Blich.0 100126 118 + 4222334
GUUUGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUGCCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCG
(((((((((((...((((((((.........((((.......))))((....))....)))))).)).((..........(((((...)))))..........)).))))))))))). ( -46.65)
>Bhalo.0 662065 118 + 4202352
GUUUGGUGGCGAUAGCGAAGAGGCCACACCCGUUCCCAUGCCGAACACGGUCGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGACUUCCCCCUGCGAGAGUAGGACGCUGCCAAGCA
((((((..(((.....(((..((......))((((((((((((....(((.((((((....)).))))))).)))))..))))))))))..(((((....))))).)))..)))))). ( -48.30)
>Bclau.0 57446 118 + 4303871
GUCCGGUGACAAUGGCAAAGAGGUCACACCCGUUCCCAUGCCGAACACGGCCGUUAAGCUCUUUUGCGCCGAUGGUAGUUGGAGGCUUCCUCCUGCGAGAGUAGGACGUUGCCGGGCA
((((((..((.((((....(.((.....)))....))))(((...((..((((((..((......))...))))))...))..)))....((((((....)))))).))..)))))). ( -48.00)
>consensus
GUUUGGUGACGAUAGCAAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCA
(((((((((((...((((((((.........((((.......))))((....))....)))))).)).((.((....(..(((((...)))))..)....)).)).))))))))))). (-44.87 = -41.48 +  -3.38)

alignment

secondary structure

dotplot

Window 9

Location	87,091 – 87,209
Length	118
Sequences	6
Columns	118
Reading direction	forward
Mean pairwise identity	88.36
Mean single sequence MFE	-46.04
Consensus MFE	-44.87
Energy contribution	-41.48
Covariance contribution	-3.38
Combinations/Pair	1.31
Mean z-score	-1.36
Structure conservation index	0.97
SVM decision value	1.11
SVM RNA-class probability	0.916980
Prediction	RNA

Download alignment: ClustalW | MAF

>Banth.0 87091 118 + 5227293/0-118
GUUUGGUGAUGAUGGCAGAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUCUAGCGCCGAUGGUAGUUGGGACCUUGUCCCUGUGAGAGUAGGACGUCGCCAAGCA
(((((((((((((((..(((.((......)).))))))).((....((....))...((((((.((((((...))).)))(((((...)))))...)))))).)).))))))))))). ( -42.70)
>Bcere.0 87092 118 + 5224283/0-118
GUUUGGUGAUGAUGGCAGAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUCUAGCGCCGAUGGUAGUUGGGACCUUGUCCCUGUGAGAGUAGGACGUCGCCAAGCA
(((((((((((((((..(((.((......)).))))))).((....((....))...((((((.((((((...))).)))(((((...)))))...)))))).)).))))))))))). ( -42.70)
>Bsubt.0 95232 118 + 4214630/0-118
GUUUGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUCGGGGGUUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCA
(((((((((((...((((((((.........((((.......))))((....))....)))))).)).(((((....)))(((((...)))))..........)).))))))))))). ( -47.90)
>Blich.0 100126 118 + 4222334/0-118
GUUUGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUGCCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCG
(((((((((((...((((((((.........((((.......))))((....))....)))))).)).((..........(((((...)))))..........)).))))))))))). ( -46.65)
>Bhalo.0 662065 118 + 4202352/0-118
GUUUGGUGGCGAUAGCGAAGAGGCCACACCCGUUCCCAUGCCGAACACGGUCGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGACUUCCCCCUGCGAGAGUAGGACGCUGCCAAGCA
((((((..(((.....(((..((......))((((((((((((....(((.((((((....)).))))))).)))))..))))))))))..(((((....))))).)))..)))))). ( -48.30)
>Bclau.0 57446 118 + 4303871/0-118
GUCCGGUGACAAUGGCAAAGAGGUCACACCCGUUCCCAUGCCGAACACGGCCGUUAAGCUCUUUUGCGCCGAUGGUAGUUGGAGGCUUCCUCCUGCGAGAGUAGGACGUUGCCGGGCA
((((((..((.((((....(.((.....)))....))))(((...((..((((((..((......))...))))))...))..)))....((((((....)))))).))..)))))). ( -48.00)
>consensus
GUUUGGUGACGAUAGCAAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCA
(((((((((((...((((((((.........((((.......))))((....))....)))))).)).((.((....(..(((((...)))))..)....)).)).))))))))))). (-44.87 = -41.48 +  -3.38)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:17:17 2006