Locus 22

Sequence ID Bsubt.0
Location 3,527,365 – 3,527,476
Length 111
Max. P 0.999814
window136 window137

overview

Window 6

Location 3,527,365 – 3,527,476
Length 111
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 71.16
Mean single sequence MFE -47.46
Consensus MFE -42.07
Energy contribution -38.26
Covariance contribution -3.81
Combinations/Pair 1.46
Mean z-score -2.60
Structure conservation index 0.89
SVM decision value 4.14
SVM RNA-class probability 0.999814
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 3527365 111 + 4214630/0-120
UGUCUCCUGACCUGUAUCAAUGGAGGCACUCGGCUCUGCUGUGGGCAG-------CUGAAGUUGCUGCCUUAGAUGCUG--GUCGUCGCUGGCGGGGCGUGAGGAUGGGUUAAAUGCCCA
((((((((((......)))..)))))))((((((((((((((((((((-------(.......))))))...(((....--)))..))).)))))))).))))..(((((.....))))) ( -48.30)
>Blich.0 3521086 111 + 4222334/0-120
UGUCUCCUUGCCUUUACCGAUGGAGGCACUCGGCUCUACCGUGGGCAG-------ACUACCUGUCUGCCUUAGACGCAA--GUCGUCGAUGGCGGGGCGUGAGGACGGGUUAAAUGCCCA
.(((....((((((((....))))))))((((((((..((((((((((-------((.....))))))))..(((....--)))....))))..)))).)))))))((((.....)))). ( -54.20)
>Bcere.0 4986104 118 + 5224283/0-120
UGUCUCCUAACCGUUAUCAACGGAGGCACUCGGUCGUGCUGUGGGUAGAAAUUUUAUUUCAUGCCUACCUUAGACGCUU--GUCGUCGGGAGUAUGACGUGAGGAUGGGUUAGAUGCCCA
(((((((..............)))))))((((((((((((((((((((((((...))))).)))))))....((((...--..))))...)))))))).))))..(((((.....))))) ( -43.74)
>Bhalo.0 3844294 115 + 4202352/0-120
UGUCUCCUUACCUUUAUCGACGGAGGCACUCGGCCAUGUUGUGGGUCG-----UCAAUCAGCGAUGACCUUAGACGCGUCCGUUGUCAUUGAUGUGGCGUGAGGUGAGGUUCAAUGCCUC
((...(((((((((...((((((((((.....)))..(((..((((((-----((.......))))))))..)))...))))))(((((....)))))).)))))))))..))....... ( -43.60)
>consensus
UGUCUCCUUACCUUUAUCAACGGAGGCACUCGGCCCUGCUGUGGGCAG_______AUUAAGUGACUACCUUAGACGCUU__GUCGUCGAUGGCGGGGCGUGAGGAUGGGUUAAAUGCCCA
(((((((..............)))))))((((((((((((..((((((................))))))..(((((....).))))...)))))))).))))..(((((.....))))) (-42.07 = -38.26 +  -3.81)

alignment

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secondary structure

Postscript

dotplot

Postscript

Window 7

Location 3,527,365 – 3,527,476
Length 111
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 71.59
Mean single sequence MFE -43.12
Consensus MFE -36.57
Energy contribution -33.13
Covariance contribution -3.44
Combinations/Pair 1.47
Mean z-score -1.67
Structure conservation index 0.85
SVM decision value 2.36
SVM RNA-class probability 0.992900
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 3527365 111 + 4214630/5-125
GGUGAUGUCUCCUGACCUGUAUCAAUGGAGGCACUCGGCUCUGCUGUGGGCAG-------CUGAAGUUGCUGCCUUAGAUGCUG--GUCGUCGCUGGCGGGGCGUGAGGAUGGGUUAAAU
.....((((((((((......)))..)))))))((((((((((((((((((((-------(.......))))))...(((....--)))..))).)))))))).))))............ ( -42.40)
>Blich.0 3521086 111 + 4222334/5-125
GGUGAUGUCUCCUUGCCUUUACCGAUGGAGGCACUCGGCUCUACCGUGGGCAG-------ACUACCUGUCUGCCUUAGACGCAA--GUCGUCGAUGGCGGGGCGUGAGGACGGGUUAAAU
.....((((....((((((((....))))))))((((((((..((((((((((-------((.....))))))))..(((....--)))....))))..)))).))))))))........ ( -48.20)
>Bcere.0 4986104 118 + 5224283/5-125
GGUGAUGUCUCCUAACCGUUAUCAACGGAGGCACUCGGUCGUGCUGUGGGUAGAAAUUUUAUUUCAUGCCUACCUUAGACGCUU--GUCGUCGGGAGUAUGACGUGAGGAUGGGUUAGAU
......((((((((.((((.....)))).....((((((((((((((((((((((((...))))).)))))))....((((...--..))))...)))))))).))))..))))..)))) ( -38.00)
>Bhalo.0 3844294 115 + 4202352/5-125
GGUAAUGUCUCCUUACCUUUAUCGACGGAGGCACUCGGCCAUGUUGUGGGUCG-----UCAAUCAGCGAUGACCUUAGACGCGUCCGUUGUCAUUGAUGUGGCGUGAGGUGAGGUUCAAU
.....((...(((((((((...((((((((((.....)))..(((..((((((-----((.......))))))))..)))...))))))(((((....)))))).)))))))))..)).. ( -43.90)
>consensus
GGUGAUGUCUCCUUACCUUUAUCAACGGAGGCACUCGGCCCUGCUGUGGGCAG_______AUUAAGUGACUACCUUAGACGCUU__GUCGUCGAUGGCGGGGCGUGAGGAUGGGUUAAAU
.....(((((((..............)))))))((((((((((((..((((((................))))))..(((((....).))))...)))))))).))))............ (-36.57 = -33.13 +  -3.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:17:14 2006