Locus 18

Sequence ID Bsubt.0
Location 92,141 – 92,183
Length 42
Max. P 0.999931
window125 window126

overview

Window 5

Location 92,141 – 92,183
Length 42
Sequences 5
Columns 49
Reading direction forward
Mean pairwise identity 70.19
Mean single sequence MFE -12.60
Consensus MFE -5.78
Energy contribution -6.82
Covariance contribution 1.04
Combinations/Pair 1.50
Mean z-score -3.95
Structure conservation index 0.46
SVM decision value 4.63
SVM RNA-class probability 0.999931
Prediction RNA
WARNING Sequence 1 too short.
WARNING Sequence 2 too short.
WARNING Sequence 3 too short.
WARNING Sequence 4 too short.
WARNING Sequence 5 too short.

Download alignment: ClustalW | MAF

>Bsubt.0 92141 42 + 4214630
UUGUUUAGUUUUGAAGGA-UCAUUCCUUCGAAACG------UGUUCUUU
.......(((((((((((-....))))))))))).------........ ( -15.20)
>Blich.0 96949 42 + 4222334
UUGUUUAGUUUUGAAGGA-UCAUUCCUUCAAAGCG------UGUUCUUU
.......(((((((((((-....))))))))))).------........ ( -15.50)
>Bhalo.0 657810 49 + 4202352
UUGUUCAGUUUUGAAGGAAUUGUUCCUUCAAAACAACUGAUUGUUUCUU
.......(((((((((((.....)))))))))))............... ( -14.70)
>Banth.0 84027 49 + 5227293
UUGUUCAGUUUUGAGAGAACUAUCUCUCAUAUAUAAAUGUAUGUUCUUU
............((((((....))))))((((((....))))))..... (  -8.80)
>Bcere.0 84028 49 + 5224283
UUGUUCAGUUUUGAGAGAACUAUCUCUCAUAUAUAAAUGUAUGUUCUUU
............((((((....))))))((((((....))))))..... (  -8.80)
>consensus
UUGUUCAGUUUUGAAGGAAUUAUUCCUUCAAAACAA_UG__UGUUCUUU
.......((((((((((.......))))))))))............... ( -5.78 =  -6.82 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 92,141 – 92,183
Length 42
Sequences 5
Columns 49
Reading direction reverse
Mean pairwise identity 70.19
Mean single sequence MFE -10.88
Consensus MFE -1.64
Energy contribution -0.92
Covariance contribution -0.72
Combinations/Pair 1.67
Mean z-score -4.18
Structure conservation index 0.15
SVM decision value 3.18
SVM RNA-class probability 0.998658
Prediction RNA
WARNING Sequence 1 too short.
WARNING Sequence 2 too short.
WARNING Sequence 3 too short.
WARNING Sequence 4 too short.
WARNING Sequence 5 too short.

Download alignment: ClustalW | MAF

>Bsubt.0 92141 42 + 4214630
AAAGAACA------CGUUUCGAAGGAAUGA-UCCUUCAAAACUAAACAA
........------.((((.((((((....-)))))).))))....... ( -10.20)
>Blich.0 96949 42 + 4222334
AAAGAACA------CGCUUUGAAGGAAUGA-UCCUUCAAAACUAAACAA
........------...(((((((((....-)))))))))......... ( -10.10)
>Bhalo.0 657810 49 + 4202352
AAGAAACAAUCAGUUGUUUUGAAGGAACAAUUCCUUCAAAACUGAACAA
.........((((((...((((((((.....)))))))))))))).... ( -14.90)
>Banth.0 84027 49 + 5227293
AAAGAACAUACAUUUAUAUAUGAGAGAUAGUUCUCUCAAAACUGAACAA
....................(((((((....)))))))........... (  -9.60)
>Bcere.0 84028 49 + 5224283
AAAGAACAUACAUUUAUAUAUGAGAGAUAGUUCUCUCAAAACUGAACAA
....................(((((((....)))))))........... (  -9.60)
>consensus
AAAGAACA__CA_UUGUUUAGAAGGAAUAAUUCCUUCAAAACUGAACAA
.......................(((........)))............ ( -1.64 =  -0.92 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:17:03 2006