Locus 17

Sequence ID Bcere.0
Location 1,849,394 – 1,849,513
Length 119
Max. P 0.965465
window124

overview

Window 4

Location 1,849,394 – 1,849,513
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 69.97
Mean single sequence MFE -31.35
Consensus MFE -20.91
Energy contribution -20.04
Covariance contribution -0.87
Combinations/Pair 1.48
Mean z-score -1.68
Structure conservation index 0.67
SVM decision value 1.58
SVM RNA-class probability 0.965465
Prediction RNA

Download alignment: ClustalW | MAF

>Bcere.0 1849394 119 + 5224283/0-120
CAGAUUACGUCUCAAUACUUUGUGCCAAUAAUUGAAUAGCGCUCAAAGGCUCUGUCUGUGUGCAGAGUGAACGGGAUUGGUCUGCCUAUUUUAAAGGAACCCUUUAUUAAGCUUAUAUG-
(((((((.(((((....(((((.(((.((......)).).)).)))))(((((((......)))))))....)))))))))))).......((((((...)))))).............- ( -29.60)
>Banth.0 1711921 119 + 5227293/0-120
CAGAUUACGUCUCAAUACUUUGUGCCAAUAAUUGAAUAGCGCUCAAAGGCUCUGUCUGUGUACAGAGUGAACGGGAUUGGUCUGCCUAUUUUAAAGGAACCCUUUAUUAAGCUUAUAUG-
(((((((.(((((....(((((.(((.((......)).).)).)))))(((((((......)))))))....)))))))))))).......((((((...)))))).............- ( -29.30)
>Bhalo.0 408223 114 + 4202352/0-120
CAGACUUCGUAUUCCAGUUUUGAACGCGUAACUAAAUA-CGUUCAAUAGCUCUGCUUGUGUGCAGAGUAAAUGGGAUCAGUCUGUCCUUU-----AGCAAUCUUCAUUCGGAAUAUACGA
((((((..(.((((((...(((((((..(......)..-)))))))..(((((((......)))))))...)))))))))))))......-----............(((.......))) ( -31.60)
>Blich.0 272992 111 + 4222334/0-120
CAGAUUCCGAUU--GAACUUUGUC----UAACUAAAUCGUGAACAAAGACUCUGCCUGUGUGCAGGGUAAUCGGGAUUAGUCUGCCUGUUUUUA-GGGAGCCCUUAUGCAGUA-AUAGA-
..((((((((((--...((((((.----..((......))..))))))(((((((......)))))))))))))))))..((((.((((....(-((....)))...))))..-.))))- ( -34.90)
>consensus
CAGAUUACGUCUCAAAACUUUGUGCCAAUAACUAAAUAGCGCUCAAAGGCUCUGCCUGUGUGCAGAGUAAACGGGAUUAGUCUGCCUAUUUUAA_GGAACCCUUUAUUAAGCAUAUAUG_
((((((((((.......((((((((...............))))))))(((((((......)))))))..))))....)))))).................................... (-20.91 = -20.04 +  -0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:17:01 2006