Locus 150

Sequence ID	Banth.0
Location	3,859,265 – 3,859,382
Length	117
Max. P	0.834368

overview

Window 5

Location	3,859,265 – 3,859,382
Length	117
Sequences	4
Columns	120
Reading direction	forward
Mean pairwise identity	73.57
Mean single sequence MFE	-32.67
Consensus MFE	-22.75
Energy contribution	-19.88
Covariance contribution	-2.88
Combinations/Pair	1.46
Mean z-score	-1.56
Structure conservation index	0.70
SVM decision value	0.70
SVM RNA-class probability	0.825337
Prediction	RNA

Download alignment: ClustalW | MAF

>Banth.0 3859265 117 + 5227293/0-120
UUUAAAAGGGAAGCUUGGUGAAACUCCAACACGGUCCCGCCACUGUAAAUGCUGAGAUUUCUUUUUGAUA-CCACUGUGAAA--ACGGGAAGGUAAAAGAAAUUAUAUGAAGCAUAAGUC
.......((((...((((.......)))).....))))...(((....(((((..(((((((((....((-((.((((....--))))...)))))))))))))......))))).))). ( -28.00)
>Bcere.0 3791566 117 + 5224283/0-120
UUUAAAAGGGAAGCUUGGUGAAACUCCAACACGGUCCCGCCACUGUAAAUGCUGAGAUUUCUUUUUAAUG-CCACUGUGAAA--ACGGGAAGGCGAAAGAAAUCAUAUGAAGCAUAAGUC
.......((((...((((.......)))).....))))...(((....(((((..((((((((((....(-((.((((....--))))...)))))))))))))......))))).))). ( -31.50)
>Bhalo.0 1661087 116 + 4202352/0-120
CGUGAAAAGGGAAGUCGGUGAAAAUCCGACACGGUCCCGCCACUGUAAAUGG-GAGAGGCUUGCAAGAU--CCACUGUCUAGCGACGGGAAGGGGGCAAGUACUCGAUGAA-CAUAAGUC
.(((....((((.((((((....).)))))....))))..))).....(((.-..(((((((((....(--((.(((((....)))))...))).)))))).)))......-)))..... ( -36.50)
>Blich.0 2804747 119 - 4222334/0-120
UUUAAAAGGGAAGUUUGGUGAAAAUCCAACGCGGUCCCGCCACUGUGAAUGAGGAGGUUAUUUCAUAAAACCCACUGUUUCUAUAUGGGAAGGGGGAAAUAACCGU-CGAUUCAUGAGCC
.......((((.(((.(((....))).)))....))))((...(((((((..(..(((((((((......((((.(((....)))))))......)))))))))..-).))))))).)). ( -34.70)
>consensus
UUUAAAAGGGAAGCUUGGUGAAAAUCCAACACGGUCCCGCCACUGUAAAUGCUGAGAUUUCUUCAUAAUA_CCACUGUGAAA__ACGGGAAGGGGAAAAAAACCAUAUGAAGCAUAAGUC
.......((((...((((.......)))).....))))..........(((((..(((((((((.......((.((((......))))...))..)))))))))......)))))..... (-22.75 = -19.88 +  -2.88)

alignment

secondary structure

dotplot

Window 6

Location	3,859,265 – 3,859,382
Length	117
Sequences	4
Columns	120
Reading direction	forward
Mean pairwise identity	76.08
Mean single sequence MFE	-35.38
Consensus MFE	-26.96
Energy contribution	-24.27
Covariance contribution	-2.69
Combinations/Pair	1.36
Mean z-score	-1.59
Structure conservation index	0.76
SVM decision value	0.73
SVM RNA-class probability	0.834368
Prediction	RNA

Download alignment: ClustalW | MAF

>Banth.0 3859265 117 + 5227293/13-133
CUUGGUGAAACUCCAACACGGUCCCGCCACUGUAAAUGCUGAGAUUUCUUUUUGAUA-CCACUGUGAAA--ACGGGAAGGUAAAAGAAAUUAUAUGAAGCAUAAGUCAGGAGACCUGCCU
.((((.......))))...((((((...(((....(((((..(((((((((....((-((.((((....--))))...)))))))))))))......))))).)))..)).))))..... ( -31.20)
>Bcere.0 3791566 117 + 5224283/13-133
CUUGGUGAAACUCCAACACGGUCCCGCCACUGUAAAUGCUGAGAUUUCUUUUUAAUG-CCACUGUGAAA--ACGGGAAGGCGAAAGAAAUCAUAUGAAGCAUAAGUCAGGAGACCUGCCU
.((((.......))))...((((((...(((....(((((..((((((((((....(-((.((((....--))))...)))))))))))))......))))).)))..)).))))..... ( -34.70)
>Bhalo.0 1661087 116 + 4202352/13-133
GUCGGUGAAAAUCCGACACGGUCCCGCCACUGUAAAUGG-GAGAGGCUUGCAAGAU--CCACUGUCUAGCGACGGGAAGGGGGCAAGUACUCGAUGAA-CAUAAGUCAGGAGACCUGCCU
((((((....).)))))..((((((.(((.......)))-..(((((((((....(--((.(((((....)))))...))).)))))).)))(((...-.....))).)).))))..... ( -39.30)
>Blich.0 2804747 119 - 4222334/13-133
UUUGGUGAAAAUCCAACGCGGUCCCGCCACUGUGAAUGAGGAGGUUAUUUCAUAAAACCCACUGUUUCUAUAUGGGAAGGGGGAAAUAACCGU-CGAUUCAUGAGCCAGGAGACCUGCCU
.(((((....).)))).((((((((....((((((((..(..(((((((((......((((.(((....)))))))......)))))))))..-).)))))).))...)).)))).)).. ( -36.30)
>consensus
CUUGGUGAAAAUCCAACACGGUCCCGCCACUGUAAAUGCUGAGAUUUCUUCAUAAUA_CCACUGUGAAA__ACGGGAAGGGGAAAAAAACCAUAUGAAGCAUAAGUCAGGAGACCUGCCU
.((((.......))))...((((((...(((....(((((..(((((((((.......((.((((......))))...))..)))))))))......))))).)))..)).))))..... (-26.96 = -24.27 +  -2.69)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:13:32 2006