Locus 15

Sequence ID Bsubt.0
Location 4,154,156 – 4,154,232
Length 76
Max. P 0.999654
window116 window117 window118 window119

overview

Window 6

Location 4,154,156 – 4,154,232
Length 76
Sequences 5
Columns 76
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -26.60
Consensus MFE -26.60
Energy contribution -26.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -3.52
Structure conservation index 1.00
SVM decision value 3.83
SVM RNA-class probability 0.999649
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 4154156 76 + 4214630
UGGUGAGCCAUGAAGGACUCGAACCUUCGACCCUCUGAUUAAAAGUCAGAUGCUCUACCAACUGAGCUAAUGGCUC
....((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))) ( -26.60)
>Bhalo.0 4163899 76 + 4202352
UGGUGAGCCAUGAAGGACUCGAACCUUCGACCCUCUGAUUAAAAGUCAGAUGCUCUACCAACUGAGCUAAUGGCUC
....((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))) ( -26.60)
>Bclau.0 4281850 76 + 4303871
UGGUGAGCCAUGAAGGACUCGAACCUUCGACCCUCUGAUUAAAAGUCAGAUGCUCUACCAACUGAGCUAAUGGCUC
....((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))) ( -26.60)
>Banth.0 5206969 76 + 5227293
UGGUGAGCCAUGAAGGACUCGAACCUUCGACCCUCUGAUUAAAAGUCAGAUGCUCUACCAACUGAGCUAAUGGCUC
....((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))) ( -26.60)
>Blich.0 4187418 76 + 4222334
UGGUGAGCCAUGAAGGACUCGAACCUUCGACCCUCUGAUUAAAAGUCAGAUGCUCUACCAACUGAGCUAAUGGCUC
....((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))) ( -26.60)
>consensus
UGGUGAGCCAUGAAGGACUCGAACCUUCGACCCUCUGAUUAAAAGUCAGAUGCUCUACCAACUGAGCUAAUGGCUC
....((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))) (-26.60 = -26.60 +  -0.00)

alignment

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secondary structure

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dotplot

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Window 7

Location 4,154,156 – 4,154,232
Length 76
Sequences 5
Columns 76
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -28.70
Consensus MFE -28.70
Energy contribution -28.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -3.38
Structure conservation index 1.00
SVM decision value 3.84
SVM RNA-class probability 0.999654
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 4154156 76 + 4214630
GAGCCAUUAGCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCGAAGGUUCGAGUCCUUCAUGGCUCACCA
(((((((..((((........))))....(((((((.....)))))))(((((.......)))))))))))).... ( -28.70)
>Bhalo.0 4163899 76 + 4202352
GAGCCAUUAGCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCGAAGGUUCGAGUCCUUCAUGGCUCACCA
(((((((..((((........))))....(((((((.....)))))))(((((.......)))))))))))).... ( -28.70)
>Bclau.0 4281850 76 + 4303871
GAGCCAUUAGCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCGAAGGUUCGAGUCCUUCAUGGCUCACCA
(((((((..((((........))))....(((((((.....)))))))(((((.......)))))))))))).... ( -28.70)
>Banth.0 5206969 76 + 5227293
GAGCCAUUAGCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCGAAGGUUCGAGUCCUUCAUGGCUCACCA
(((((((..((((........))))....(((((((.....)))))))(((((.......)))))))))))).... ( -28.70)
>Blich.0 4187418 76 + 4222334
GAGCCAUUAGCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCGAAGGUUCGAGUCCUUCAUGGCUCACCA
(((((((..((((........))))....(((((((.....)))))))(((((.......)))))))))))).... ( -28.70)
>consensus
GAGCCAUUAGCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCGAAGGUUCGAGUCCUUCAUGGCUCACCA
(((((((..((((........))))....(((((((.....)))))))(((((.......)))))))))))).... (-28.70 = -28.70 +  -0.00)

alignment

Postscript

secondary structure

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dotplot

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Window 8

Location 4,154,156 – 4,154,232
Length 76
Sequences 5
Columns 76
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -26.60
Consensus MFE -26.60
Energy contribution -26.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -3.52
Structure conservation index 1.00
SVM decision value 3.83
SVM RNA-class probability 0.999649
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 4154156 76 + 4214630/0-76
UGGUGAGCCAUGAAGGACUCGAACCUUCGACCCUCUGAUUAAAAGUCAGAUGCUCUACCAACUGAGCUAAUGGCUC
....((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))) ( -26.60)
>Bhalo.0 4163899 76 + 4202352/0-76
UGGUGAGCCAUGAAGGACUCGAACCUUCGACCCUCUGAUUAAAAGUCAGAUGCUCUACCAACUGAGCUAAUGGCUC
....((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))) ( -26.60)
>Bclau.0 4281850 76 + 4303871/0-76
UGGUGAGCCAUGAAGGACUCGAACCUUCGACCCUCUGAUUAAAAGUCAGAUGCUCUACCAACUGAGCUAAUGGCUC
....((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))) ( -26.60)
>Banth.0 5206969 76 + 5227293/0-76
UGGUGAGCCAUGAAGGACUCGAACCUUCGACCCUCUGAUUAAAAGUCAGAUGCUCUACCAACUGAGCUAAUGGCUC
....((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))) ( -26.60)
>Blich.0 4187418 76 + 4222334/0-76
UGGUGAGCCAUGAAGGACUCGAACCUUCGACCCUCUGAUUAAAAGUCAGAUGCUCUACCAACUGAGCUAAUGGCUC
....((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))) ( -26.60)
>consensus
UGGUGAGCCAUGAAGGACUCGAACCUUCGACCCUCUGAUUAAAAGUCAGAUGCUCUACCAACUGAGCUAAUGGCUC
....((((((((((((.......))))).....((((((.....)))))).((((........))))..))))))) (-26.60 = -26.60 +  -0.00)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 9

Location 4,154,156 – 4,154,232
Length 76
Sequences 5
Columns 76
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -28.70
Consensus MFE -28.70
Energy contribution -28.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -3.38
Structure conservation index 1.00
SVM decision value 3.84
SVM RNA-class probability 0.999654
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 4154156 76 + 4214630/0-76
GAGCCAUUAGCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCGAAGGUUCGAGUCCUUCAUGGCUCACCA
(((((((..((((........))))....(((((((.....)))))))(((((.......)))))))))))).... ( -28.70)
>Bhalo.0 4163899 76 + 4202352/0-76
GAGCCAUUAGCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCGAAGGUUCGAGUCCUUCAUGGCUCACCA
(((((((..((((........))))....(((((((.....)))))))(((((.......)))))))))))).... ( -28.70)
>Bclau.0 4281850 76 + 4303871/0-76
GAGCCAUUAGCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCGAAGGUUCGAGUCCUUCAUGGCUCACCA
(((((((..((((........))))....(((((((.....)))))))(((((.......)))))))))))).... ( -28.70)
>Banth.0 5206969 76 + 5227293/0-76
GAGCCAUUAGCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCGAAGGUUCGAGUCCUUCAUGGCUCACCA
(((((((..((((........))))....(((((((.....)))))))(((((.......)))))))))))).... ( -28.70)
>Blich.0 4187418 76 + 4222334/0-76
GAGCCAUUAGCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCGAAGGUUCGAGUCCUUCAUGGCUCACCA
(((((((..((((........))))....(((((((.....)))))))(((((.......)))))))))))).... ( -28.70)
>consensus
GAGCCAUUAGCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCGAAGGUUCGAGUCCUUCAUGGCUCACCA
(((((((..((((........))))....(((((((.....)))))))(((((.......)))))))))))).... (-28.70 = -28.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:16:55 2006