| Sequence ID | Banth.0 |
|---|---|
| Location | 3,795,676 – 3,795,716 |
| Length | 40 |
| Max. P | 0.977580 |
| Location | 3,795,676 – 3,795,716 |
|---|---|
| Length | 40 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 59.29 |
| Mean single sequence MFE | -18.36 |
| Consensus MFE | -13.70 |
| Energy contribution | -13.42 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.38 |
| Mean z-score | -4.01 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.977580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Banth.0 3795676 40 + 5227293 AUGCU-AGUAUA-----AGAAGGGCCCUGCUU----------UGCAGGGUUUUUUU .....-......-----(((((((((((((..----------.))))))))))))) ( -15.20) >Bcere.0 3729281 40 + 5224283 AUGCU-AGUAUA-----AGAAGGGCCCUGCUU----------UGCAGGGUUUUUUU .....-......-----(((((((((((((..----------.))))))))))))) ( -15.20) >Bsubt.0 2646077 46 - 4214630 AUAUU-AAGGAAU----AGAAGGACCCCGCAGAUGC-----CUGCGGGGAUUUUUU .....-.......----.((((((((((((((....-----)))))))).)))))) ( -18.60) >Blich.0 2549536 50 - 4222334 UUUUU-AAGGAAU----AGAAGGACCCCGCAGAGGUACUU-CUGCGGGGAUUUUUU .....-.......----.((((((((((((((((....))-)))))))).)))))) ( -21.20) >Bhalo.0 2714152 56 + 4202352 AUACAGAACGUAUGAUCACGGGCACCCCGUAAGAUCAAUUCUUACGGGGAUUUUUU .....(..(((......)))..).((((((((((.....))))))))))....... ( -21.60) >consensus AUACU_AAGGUAU____AGAAGGACCCCGCAG__________UGCGGGGAUUUUUU .................(((((..((((((((.........))))))))..))))) (-13.70 = -13.42 + -0.28)
| Location | 3,795,676 – 3,795,716 |
|---|---|
| Length | 40 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 59.29 |
| Mean single sequence MFE | -14.14 |
| Consensus MFE | -11.76 |
| Energy contribution | -11.60 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.38 |
| Mean z-score | -3.67 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.938474 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Banth.0 3795676 40 + 5227293 AAAAAAACCCUGCA----------AAGCAGGGCCCUUCU-----UAUACU-AGCAU .......((((((.----------..)))))).......-----......-..... ( -9.40) >Bcere.0 3729281 40 + 5224283 AAAAAAACCCUGCA----------AAGCAGGGCCCUUCU-----UAUACU-AGCAU .......((((((.----------..)))))).......-----......-..... ( -9.40) >Bsubt.0 2646077 46 - 4214630 AAAAAAUCCCCGCAG-----GCAUCUGCGGGGUCCUUCU----AUUCCUU-AAUAU .......((((((((-----....)))))))).......----.......-..... ( -16.20) >Blich.0 2549536 50 - 4222334 AAAAAAUCCCCGCAG-AAGUACCUCUGCGGGGUCCUUCU----AUUCCUU-AAAAA .......((((((((-(......))))))))).......----.......-..... ( -18.10) >Bhalo.0 2714152 56 + 4202352 AAAAAAUCCCCGUAAGAAUUGAUCUUACGGGGUGCCCGUGAUCAUACGUUCUGUAU .......((((((((((.....)))))))))).(..((((....))))..)..... ( -17.60) >consensus AAAAAAUCCCCGCA__________AUGCGGGGUCCUUCU____AUACAUU_AGCAU .......((((((((.........))))))))........................ (-11.76 = -11.60 + -0.16)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:28:14 2006