Locus 148

Sequence ID Banth.0
Location 3,795,570 – 3,795,665
Length 95
Max. P 0.992512
window969 window970 window971 window972

overview

Window 9

Location 3,795,570 – 3,795,665
Length 95
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 85.19
Mean single sequence MFE -28.13
Consensus MFE -20.18
Energy contribution -20.10
Covariance contribution -0.08
Combinations/Pair 1.17
Mean z-score -4.00
Structure conservation index 0.72
SVM decision value 1.11
SVM RNA-class probability 0.917025
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 3795570 95 + 5227293
UAACAACAUCACC--UUCGAUGUUGUUGCCAACCGCGGAGAAGACUUACGUUUCCCCAUAAGUUCUUCCUCCGGUUUCUCCUCUCCCUUUGCCUUCU
((((((((((...--...))))))))))..(((((.(..(((((((((.(......).)))).)))))..))))))..................... ( -25.70)
>Bcere.0 3729175 95 + 5224283
UAACAACAUCACC--UUCGAUGUUGUUGCCAACCGCGGAGAAGACUUACGUUUCCCCAUAAGUUCUUCCUCCGGUUUCUCCUCUCCCUUUGCCUUCU
((((((((((...--...))))))))))..(((((.(..(((((((((.(......).)))).)))))..))))))..................... ( -25.70)
>Bsubt.0 2645968 97 - 4214630
AAGCAACAGCAUCUAGAGGAUGUUGUUGCCAACCGCGGAGAAGACUUACGUUUCCCCAUAAGUUCUUCCUCCGGUUUCUCCUCUCCCUUUGCCUUCU
..(((((((((((.....))))))))))).(((((.(..(((((((((.(......).)))).)))))..))))))..................... ( -31.30)
>Blich.0 2549428 96 - 4222334
UAGCAACAGCAUCGAUUG-AUGUUGUUGCCAACCGCGGAGAAGACUUACGUUUCCCCAUAAGUUCUUCCUCCGGUUUCUCCUCUCCCUUUGCCUUCU
..(((((((((((....)-)))))))))).(((((.(..(((((((((.(......).)))).)))))..))))))..................... ( -30.60)
>Bhalo.0 2714057 95 + 4202352
GACUAGCAGCAUUCGAUGAAUGUUGC--ACAACCGCGGAGAAGGCUUACGUUUCCCCAUAAGUUCUUCCUCCGGUUUCUCCUCUCCCAUAGCCUCGU
..((((((((((((...)))))))))--..(((((.(..(((((((((.(......).)))).)))))..))))))............)))...... ( -25.70)
>Bclau.0 2508550 94 + 4303871
UGUUAGCAGCA--CAGUACGUGUUGC-GACAACCGCGGAGAAGGCUUACGUUUCCCCAUAAGCUCUUCCUCCGGUUUCUCCUCUCCCAUAGCCAUGU
.((((((((((--(.....)))))))-((.(((((.(..(((((((((.(......).))))).))))..))))))))..........))))..... ( -29.80)
>consensus
UAACAACAGCAUC_AUUGGAUGUUGUUGCCAACCGCGGAGAAGACUUACGUUUCCCCAUAAGUUCUUCCUCCGGUUUCUCCUCUCCCUUUGCCUUCU
...((((((((.........))))))))..(((((.(..(((((((((.(......).))))).))))..))))))..................... (-20.18 = -20.10 +  -0.08)

alignment

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secondary structure

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dotplot

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Window 0

Location 3,795,570 – 3,795,665
Length 95
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 85.19
Mean single sequence MFE -32.40
Consensus MFE -28.90
Energy contribution -28.52
Covariance contribution -0.39
Combinations/Pair 1.29
Mean z-score -3.42
Structure conservation index 0.89
SVM decision value 2.33
SVM RNA-class probability 0.992512
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 3795570 95 + 5227293
AGAAGGCAAAGGGAGAGGAGAAACCGGAGGAAGAACUUAUGGGGAAACGUAAGUCUUCUCCGCGGUUGGCAACAACAUCGAA--GGUGAUGUUGUUA
....(.(((.(((((((((....((((((......))).)))(....).....)))))))).)..))).)((((((((((..--..)))))))))). ( -32.10)
>Bcere.0 3729175 95 + 5224283
AGAAGGCAAAGGGAGAGGAGAAACCGGAGGAAGAACUUAUGGGGAAACGUAAGUCUUCUCCGCGGUUGGCAACAACAUCGAA--GGUGAUGUUGUUA
....(.(((.(((((((((....((((((......))).)))(....).....)))))))).)..))).)((((((((((..--..)))))))))). ( -32.10)
>Bsubt.0 2645968 97 - 4214630
AGAAGGCAAAGGGAGAGGAGAAACCGGAGGAAGAACUUAUGGGGAAACGUAAGUCUUCUCCGCGGUUGGCAACAACAUCCUCUAGAUGCUGUUGCUU
...((((((.((.((((((....((((((.((((.((((((......))))))))))))))).)((((....)))).)))))).....)).)))))) ( -38.20)
>Blich.0 2549428 96 - 4222334
AGAAGGCAAAGGGAGAGGAGAAACCGGAGGAAGAACUUAUGGGGAAACGUAAGUCUUCUCCGCGGUUGGCAACAACAU-CAAUCGAUGCUGUUGCUA
.....................((((((..(((((.((((((......)))))))))))..).)))))(((((((.(((-(....)))).))))))). ( -34.30)
>Bhalo.0 2714057 95 + 4202352
ACGAGGCUAUGGGAGAGGAGAAACCGGAGGAAGAACUUAUGGGGAAACGUAAGCCUUCUCCGCGGUUGU--GCAACAUUCAUCGAAUGCUGCUAGUC
....(((((............((((((..((((..((((((......)))))).))))..).)))))..--(((.(((((...))))).)))))))) ( -27.20)
>Bclau.0 2508550 94 + 4303871
ACAUGGCUAUGGGAGAGGAGAAACCGGAGGAAGAGCUUAUGGGGAAACGUAAGCCUUCUCCGCGGUUGUC-GCAACACGUACUG--UGCUGCUAACA
.(((((.(((((..(.((...((((((..((((.(((((((......)))))))))))..).))))).))-.)..).)))))))--))......... ( -30.50)
>consensus
AGAAGGCAAAGGGAGAGGAGAAACCGGAGGAAGAACUUAUGGGGAAACGUAAGUCUUCUCCGCGGUUGGCAACAACAUCCAAU_GAUGCUGUUGCUA
.....................((((((..((((.(((((((......)))))))))))..).)))))(((((((.((((.....)))).))))))). (-28.90 = -28.52 +  -0.39)

alignment

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secondary structure

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dotplot

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Window 1

Location 3,795,570 – 3,795,665
Length 95
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 85.19
Mean single sequence MFE -28.13
Consensus MFE -20.18
Energy contribution -20.10
Covariance contribution -0.08
Combinations/Pair 1.17
Mean z-score -4.00
Structure conservation index 0.72
SVM decision value 1.11
SVM RNA-class probability 0.917025
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 3795570 95 + 5227293/0-97
UAACAACAUCACC--UUCGAUGUUGUUGCCAACCGCGGAGAAGACUUACGUUUCCCCAUAAGUUCUUCCUCCGGUUUCUCCUCUCCCUUUGCCUUCU
((((((((((...--...))))))))))..(((((.(..(((((((((.(......).)))).)))))..))))))..................... ( -25.70)
>Bcere.0 3729175 95 + 5224283/0-97
UAACAACAUCACC--UUCGAUGUUGUUGCCAACCGCGGAGAAGACUUACGUUUCCCCAUAAGUUCUUCCUCCGGUUUCUCCUCUCCCUUUGCCUUCU
((((((((((...--...))))))))))..(((((.(..(((((((((.(......).)))).)))))..))))))..................... ( -25.70)
>Bsubt.0 2645968 97 - 4214630/0-97
AAGCAACAGCAUCUAGAGGAUGUUGUUGCCAACCGCGGAGAAGACUUACGUUUCCCCAUAAGUUCUUCCUCCGGUUUCUCCUCUCCCUUUGCCUUCU
..(((((((((((.....))))))))))).(((((.(..(((((((((.(......).)))).)))))..))))))..................... ( -31.30)
>Blich.0 2549428 96 - 4222334/0-97
UAGCAACAGCAUCGAUUG-AUGUUGUUGCCAACCGCGGAGAAGACUUACGUUUCCCCAUAAGUUCUUCCUCCGGUUUCUCCUCUCCCUUUGCCUUCU
..(((((((((((....)-)))))))))).(((((.(..(((((((((.(......).)))).)))))..))))))..................... ( -30.60)
>Bhalo.0 2714057 95 + 4202352/0-97
GACUAGCAGCAUUCGAUGAAUGUUGC--ACAACCGCGGAGAAGGCUUACGUUUCCCCAUAAGUUCUUCCUCCGGUUUCUCCUCUCCCAUAGCCUCGU
..((((((((((((...)))))))))--..(((((.(..(((((((((.(......).)))).)))))..))))))............)))...... ( -25.70)
>Bclau.0 2508550 94 + 4303871/0-97
UGUUAGCAGCA--CAGUACGUGUUGC-GACAACCGCGGAGAAGGCUUACGUUUCCCCAUAAGCUCUUCCUCCGGUUUCUCCUCUCCCAUAGCCAUGU
.((((((((((--(.....)))))))-((.(((((.(..(((((((((.(......).))))).))))..))))))))..........))))..... ( -29.80)
>consensus
UAACAACAGCAUC_AUUGGAUGUUGUUGCCAACCGCGGAGAAGACUUACGUUUCCCCAUAAGUUCUUCCUCCGGUUUCUCCUCUCCCUUUGCCUUCU
...((((((((.........))))))))..(((((.(..(((((((((.(......).))))).))))..))))))..................... (-20.18 = -20.10 +  -0.08)

alignment

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secondary structure

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dotplot

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Window 2

Location 3,795,570 – 3,795,665
Length 95
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 85.19
Mean single sequence MFE -32.40
Consensus MFE -28.90
Energy contribution -28.52
Covariance contribution -0.39
Combinations/Pair 1.29
Mean z-score -3.42
Structure conservation index 0.89
SVM decision value 2.33
SVM RNA-class probability 0.992512
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 3795570 95 + 5227293/0-97
AGAAGGCAAAGGGAGAGGAGAAACCGGAGGAAGAACUUAUGGGGAAACGUAAGUCUUCUCCGCGGUUGGCAACAACAUCGAA--GGUGAUGUUGUUA
....(.(((.(((((((((....((((((......))).)))(....).....)))))))).)..))).)((((((((((..--..)))))))))). ( -32.10)
>Bcere.0 3729175 95 + 5224283/0-97
AGAAGGCAAAGGGAGAGGAGAAACCGGAGGAAGAACUUAUGGGGAAACGUAAGUCUUCUCCGCGGUUGGCAACAACAUCGAA--GGUGAUGUUGUUA
....(.(((.(((((((((....((((((......))).)))(....).....)))))))).)..))).)((((((((((..--..)))))))))). ( -32.10)
>Bsubt.0 2645968 97 - 4214630/0-97
AGAAGGCAAAGGGAGAGGAGAAACCGGAGGAAGAACUUAUGGGGAAACGUAAGUCUUCUCCGCGGUUGGCAACAACAUCCUCUAGAUGCUGUUGCUU
...((((((.((.((((((....((((((.((((.((((((......))))))))))))))).)((((....)))).)))))).....)).)))))) ( -38.20)
>Blich.0 2549428 96 - 4222334/0-97
AGAAGGCAAAGGGAGAGGAGAAACCGGAGGAAGAACUUAUGGGGAAACGUAAGUCUUCUCCGCGGUUGGCAACAACAU-CAAUCGAUGCUGUUGCUA
.....................((((((..(((((.((((((......)))))))))))..).)))))(((((((.(((-(....)))).))))))). ( -34.30)
>Bhalo.0 2714057 95 + 4202352/0-97
ACGAGGCUAUGGGAGAGGAGAAACCGGAGGAAGAACUUAUGGGGAAACGUAAGCCUUCUCCGCGGUUGU--GCAACAUUCAUCGAAUGCUGCUAGUC
....(((((............((((((..((((..((((((......)))))).))))..).)))))..--(((.(((((...))))).)))))))) ( -27.20)
>Bclau.0 2508550 94 + 4303871/0-97
ACAUGGCUAUGGGAGAGGAGAAACCGGAGGAAGAGCUUAUGGGGAAACGUAAGCCUUCUCCGCGGUUGUC-GCAACACGUACUG--UGCUGCUAACA
.(((((.(((((..(.((...((((((..((((.(((((((......)))))))))))..).))))).))-.)..).)))))))--))......... ( -30.50)
>consensus
AGAAGGCAAAGGGAGAGGAGAAACCGGAGGAAGAACUUAUGGGGAAACGUAAGUCUUCUCCGCGGUUGGCAACAACAUCCAAU_GAUGCUGUUGCUA
.....................((((((..((((.(((((((......)))))))))))..).)))))(((((((.((((.....)))).))))))). (-28.90 = -28.52 +  -0.39)

alignment

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secondary structure

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dotplot

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Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:28:13 2006