| Sequence ID | Bsubt.0 |
|---|---|
| Location | 1,397,483 – 1,397,532 |
| Length | 49 |
| Max. P | 0.983132 |
| Location | 1,397,483 – 1,397,532 |
|---|---|
| Length | 49 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 61.65 |
| Mean single sequence MFE | -24.66 |
| Consensus MFE | -19.36 |
| Energy contribution | -18.92 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.67 |
| Mean z-score | -6.58 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Bsubt.0 1397483 49 - 4214630 GGUAUAACUCUCGUCCCUACUAUCA--UGUAUAGUAGGGGCGGGAGUUUUU .....((((((((((((((((((..--...))))))))))))))))))... ( -28.50) >Blich.0 1449828 51 - 4222334 GGUAUAACUCUCGUCCCUACUAUUGGUUUUAUAGUAGGUUCGGGGGUUUUU .....((((((((..((((((((.......))))))))..))))))))... ( -21.50) >Bcere.0 2487029 49 + 5224283 CUAAUAACUCUCGUCCUCAAGAUGA--AUAAUCUUGGGGGUGGGAGUUUUU .....(((((((..(((((((((..--...)))))))))..)))))))... ( -24.70) >Banth.0 2469959 49 + 5227293 AUGAUAAAUCUCGUCCCUAAGACUA--AAAGUCUUGGGGGUGGGAUUUUUU .....(((((((..(((((((((..--...)))))))))..)))))))... ( -24.50) >Bhalo.0 3321780 48 - 4202352 CGACAAGUGAUCGUCCCCAAGACUU---UUAUCAGUCUUGGGGACGUUUUU ...........(((((((((((((.---.....)))))))))))))..... ( -24.10) >consensus CGAAUAACUCUCGUCCCUAAGAUUA__AUUAUCGUAGGGGCGGGAGUUUUU .....((((((((((((((((((.......))))))))))))))))))... (-19.36 = -18.92 + -0.44)
| Location | 1,397,483 – 1,397,532 |
|---|---|
| Length | 49 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 61.65 |
| Mean single sequence MFE | -17.62 |
| Consensus MFE | -8.46 |
| Energy contribution | -9.22 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.47 |
| Mean z-score | -5.28 |
| Structure conservation index | 0.48 |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.983132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Bsubt.0 1397483 49 - 4214630 AAAAACUCCCGCCCCUACUAUACA--UGAUAGUAGGGACGAGAGUUAUACC ...(((((.((.(((((((((...--..))))))))).)).)))))..... ( -21.50) >Blich.0 1449828 51 - 4222334 AAAAACCCCCGAACCUACUAUAAAACCAAUAGUAGGGACGAGAGUUAUACC ...(((.(.((..((((((((.......))))))))..)).).)))..... ( -13.90) >Bcere.0 2487029 49 + 5224283 AAAAACUCCCACCCCCAAGAUUAU--UCAUCUUGAGGACGAGAGUUAUUAG ...(((((.(..((.((((((...--..)))))).))..).)))))..... ( -12.80) >Banth.0 2469959 49 + 5227293 AAAAAAUCCCACCCCCAAGACUUU--UAGUCUUAGGGACGAGAUUUAUCAU ...(((((.(..(((.(((((...--..))))).)))..).)))))..... ( -13.60) >Bhalo.0 3321780 48 - 4202352 AAAAACGUCCCCAAGACUGAUAA---AAGUCUUGGGGACGAUCACUUGUCG .....(((((((((((((.....---.)))))))))))))........... ( -26.30) >consensus AAAAACUCCCACCCCCAAGAUAAA__UAAUCUUAGGGACGAGAGUUAUACC ...(((((.(..(((((((((.......)))))))))..).)))))..... ( -8.46 = -9.22 + 0.76)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:28:03 2006