Locus 144

Sequence ID Banth.0
Location 2,469,727 – 2,469,841
Length 114
Max. P 0.873886
window955 window956

overview

Window 5

Location 2,469,727 – 2,469,841
Length 114
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 76.27
Mean single sequence MFE -25.23
Consensus MFE -22.98
Energy contribution -19.44
Covariance contribution -3.54
Combinations/Pair 1.41
Mean z-score -0.53
Structure conservation index 0.91
SVM decision value 0.88
SVM RNA-class probability 0.873886
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 2469727 114 + 5227293/0-120
AUGCAGUGAAGAGAAGAGUAAAUAAGAUGAAUUUUUCACAGAGAGCUCCAUUUAGCUGAAAAGGAGUAAAAAUUCUUUAUUGAACCAAGCCUCUGAGCAGCGCAUCGGAAU----CUA--
...((((((((((((((((...........))))))).......(((((.(((.....))).)))))......))))))))).....((..(((((((...)).)))))..----)).-- ( -23.60)
>Bcere.0 2551778 114 + 5224283/0-120
AUGCAGUGAAGAGAAGAGUAAAUAAAAUGAAUUUUUCACAGAGAGCUCCAUUUAGCUGAAAAGGAGUAAAAAUUCUUUAUUGAACCAAGCCUCUGAGCAGCACAUCGGAAC----CUA--
...((((((((((((((((...........))))))).......(((((.(((.....))).)))))......))))))))).....((..(((((........)))))..----)).-- ( -23.20)
>Bhalo.0 3321532 120 - 4202352/0-120
ACGCGAUGAAGAGAAGAGUACAUACAUCCCUUUCCUCACAGAAAGCCUGUAGUUGCUGAGAACGGGUAGGAGAGCUGUAUGGAAGCAAGACUCUGAGCGGCACAUCGGAACAACCCUACG
...(((((..(...(((((.((((((...(((((((........((((((...........))))))))))))).))))))........)))))...)....)))))............. ( -28.90)
>consensus
AUGCAGUGAAGAGAAGAGUAAAUAAAAUGAAUUUUUCACAGAGAGCUCCAUUUAGCUGAAAAGGAGUAAAAAUUCUUUAUUGAACCAAGCCUCUGAGCAGCACAUCGGAAC____CUA__
..((.((..((((.......((((((..((((((((........(((((.............))))))))))))))))))).........))))..)).))................... (-22.98 = -19.44 +  -3.54)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 6

Location 2,469,727 – 2,469,818
Length 91
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 68.28
Mean single sequence MFE -29.27
Consensus MFE -15.34
Energy contribution -14.68
Covariance contribution -0.66
Combinations/Pair 1.12
Mean z-score -1.60
Structure conservation index 0.52
SVM decision value 0.06
SVM RNA-class probability 0.566015
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 2469727 91 + 5227293/93-213
UGAGCAGCGCAUCGGAAU----CUA-----------------UUAAU----AGA---GGGUGGUGUGACGGGAGCUCCCGUUAUAGAGCUAUGGUAUAAGCAUGA-AUGAAAAUGCAGUA
..(((..(((((((...(----(((-----------------....)----)))---...)))))))(((((....)))))......))).........((((..-......)))).... ( -25.20)
>Bcere.0 2551778 91 + 5224283/93-213
UGAGCAGCACAUCGGAAC----CUA-----------------UUAUU----AGG---GGGUGGUGUGACGGGAGCUCCCGUUAUAGAGCUAUGGUAUAAGCAUGA-AUUAGAAUGCAGUA
..(((..(((((((...(----(((-----------------....)----)))---...)))))))(((((....)))))......))).........((((..-......)))).... ( -28.00)
>Bhalo.0 3321532 119 - 4202352/93-213
UGAGCGGCACAUCGGAACAACCCUACGCCGGCCGGCAAGCAUUUAAUCCAAAGGUUGGGAUGGUGUGACAGGAGCUCCUGUUAUUGAGCAAUG-UAUAGGCUCACUAUACACAUGAGGUU
...((..(((((((...(((((....(((....))).....(((.....))))))))...)))))))(((((....)))))......))..((-(((((.....)))))))......... ( -34.60)
>consensus
UGAGCAGCACAUCGGAAC____CUA_________________UUAAU____AGG___GGGUGGUGUGACGGGAGCUCCCGUUAUAGAGCUAUGGUAUAAGCAUGA_AUAAAAAUGCAGUA
...((.((.((((.............................................))))))((((((((....))))))))...............))................... (-15.34 = -14.68 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:28:02 2006