Locus 143

Sequence ID Banth.0
Location 33,995 – 34,115
Length 120
Max. P 0.983138
window952 window953 window954

overview

Window 2

Location 33,995 – 34,115
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 87.72
Mean single sequence MFE -46.04
Consensus MFE -45.31
Energy contribution -41.73
Covariance contribution -3.58
Combinations/Pair 1.31
Mean z-score -1.20
Structure conservation index 0.98
SVM decision value 0.68
SVM RNA-class probability 0.820409
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 33995 120 + 5227293/0-120
GUUUGGUGAUGAUGGCAGAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUCUAGCGCCGAUGGUAGUUGGGACCUUGUCCCUGUGAGAGUAGGACGUCGCCAAGCAAC
(((((((((((((((..(((.((......)).))))))).((....((....))...((((((.((((((...))).)))(((((...)))))...)))))).)).)))))))))))... ( -42.70)
>Bcere.0 33975 120 + 5224283/0-120
GUUUGGUGAUGAUGGCAGAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUCUAGCGCCGAUGGUAGUUGGGACCUUGUCCCUGUGAGAGUAGGACGUCGCCAAGCAAC
(((((((((((((((..(((.((......)).))))))).((....((....))...((((((.((((((...))).)))(((((...)))))...)))))).)).)))))))))))... ( -42.70)
>Bsubt.0 35233 120 + 4214630/0-120
GUUUGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUCGGGGGUUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCAAG
(((((((((((...((((((((.........((((.......))))((....))....)))))).)).(((((....)))(((((...)))))..........)).)))))))))))... ( -47.90)
>Blich.0 39551 120 + 4222334/0-120
GUUUGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUGCCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCGCU
(((((((((((...((((((((.........((((.......))))((....))....)))))).)).((..........(((((...)))))..........)).)))))))))))... ( -46.65)
>Bhalo.0 28399 120 + 4202352/0-120
GUUUGGUGGCGAUAGCGAAGAGGCCACACCCGUUCCCAUGCCGAACACGGUCGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGCGAGAGUAGGACGCUGCCAAGCGAU
((((((..(((........((((((...(((((((.......))))((.((((....(((....)))..)))).))....)))))))))..(((((....))))).)))..))))))... ( -51.00)
>Bclau.0 16731 120 + 4303871/0-120
GUCCGGUGACAAUGGCAAAGAGGUCACACCCGUUCCCAUGCCGAACACGGCCGUUAAGCUCUUUUGCGCCGAUGGUAGUUGGAGGCUUCCUCCUGUGAGAGUAGGACGUUGCCGGGCAAA
((((((..((.((((....(.((.....)))....))))((((....)))).(((..((((((..(((((...)))....(((((...))))).))))))))..)))))..))))))... ( -45.30)
>consensus
GUUUGGUGACGAUAGCAAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCAAC
(((((((((((...((((((((.........((((.......))))((....))....)))))).)).((.((....(..(((((...)))))..)....)).)).)))))))))))... (-45.31 = -41.73 +  -3.58)

alignment

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secondary structure

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dotplot

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Window 3

Location 33,995 – 34,114
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.82
Mean single sequence MFE -44.10
Consensus MFE -38.33
Energy contribution -34.45
Covariance contribution -3.88
Combinations/Pair 1.56
Mean z-score -2.66
Structure conservation index 0.87
SVM decision value 1.75
SVM RNA-class probability 0.975676
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 33995 119 + 5227293/38-158
UACCGAACACGGAAGUUAAGCUCUCUAGCGCCGAUGGUAGUUGGGACCUUGUCCCUGUGAGAGUAGGACGUCGCCAAGCAACUA-AAAACACAAGUCUUUUGACUUGUGUUUUUUUGUGU
......((((((..(((..((((((.((((((...))).)))(((((...)))))...))))))..)))....))........(-((((((((((((....)))))))))))))..)))) ( -41.70)
>Bcere.0 33975 119 + 5224283/38-158
UACCGAACACGGAAGUUAAGCUCUCUAGCGCCGAUGGUAGUUGGGACCUUGUCCCUGUGAGAGUAGGACGUCGCCAAGCAACUA-AAAACACAAGUCUUUUGACUUGUGUUUUUUUGUGU
......((((((..(((..((((((.((((((...))).)))(((((...)))))...))))))..)))....))........(-((((((((((((....)))))))))))))..)))) ( -41.70)
>Bsubt.0 35233 117 + 4214630/38-158
UACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUCGGGGGUUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCAAGCU-UAAACCCAGCUUA-AUGAGCUGGG-UUUUUUGUUU
.........(((..(((..(((((((((..(((((....)))))(((....)))))).))))))..))).)))..(((((((..-.(((((((((((.-..))))))))-)))))))))) ( -42.70)
>Blich.0 39551 119 + 4222334/38-158
UGCCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCGCUAA-GAGGACCAGCUUAUAUAAGCUGGUCUUUUUUAUUU
..(((....)))........(((((.(((((.........((((.(((.(((..((.....))..))).))).)))))))))))-)))(((((((((....))))))))).......... ( -46.10)
>Bhalo.0 28399 117 + 4202352/38-158
UGCCGAACACGGUCGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGCGAGAGUAGGACGCUGCCAAGCGAU---AAAGCACAAUCCAAUCGGGUUGUGCUUUUUUAUUG
.((((....)))).(..((((.((((((((((...))).)))))))))))..)(((((....))))).((((....))))..---((((((((((((....))))))))))))....... ( -47.60)
>Bclau.0 16731 120 + 4303871/38-158
UGCCGAACACGGCCGUUAAGCUCUUUUGCGCCGAUGGUAGUUGGAGGCUUCCUCCUGUGAGAGUAGGACGUUGCCGGGCAAAUAUUAAAGACACCUGAAUAGGUGUCUUUUUUGUUAUGG
((((.....((((((((..((((((..(((((...)))....(((((...))))).))))))))..))))..))))))))((((..((((((((((....))))))))))..)))).... ( -44.80)
>consensus
UACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCAACUA_AAAACACAACUCAUUUGAGUUGUGUUUUUUUAUGU
..(((....)))..(((..((((((..(((((...)))....(((((...))))).))))))))..)))((......))......((((((((((((....))))))))))))....... (-38.33 = -34.45 +  -3.88)

alignment

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secondary structure

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dotplot

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Window 4

Location 33,995 – 34,114
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.82
Mean single sequence MFE -40.65
Consensus MFE -30.62
Energy contribution -28.10
Covariance contribution -2.52
Combinations/Pair 1.52
Mean z-score -3.17
Structure conservation index 0.75
SVM decision value 1.93
SVM RNA-class probability 0.983138
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 33995 119 + 5227293/38-158
ACACAAAAAAACACAAGUCAAAAGACUUGUGUUUU-UAGUUGCUUGGCGACGUCCUACUCUCACAGGGACAAGGUCCCAACUACCAUCGGCGCUAGAGAGCUUAACUUCCGUGUUCGGUA
((((..(((((((((((((....))))))))))))-).(((((...)))))......(((((...(((((...))))).....((...)).....)))))..........))))...... ( -36.90)
>Bcere.0 33975 119 + 5224283/38-158
ACACAAAAAAACACAAGUCAAAAGACUUGUGUUUU-UAGUUGCUUGGCGACGUCCUACUCUCACAGGGACAAGGUCCCAACUACCAUCGGCGCUAGAGAGCUUAACUUCCGUGUUCGGUA
((((..(((((((((((((....))))))))))))-).(((((...)))))......(((((...(((((...))))).....((...)).....)))))..........))))...... ( -36.90)
>Bsubt.0 35233 117 + 4214630/38-158
AAACAAAAAA-CCCAGCUCAU-UAAGCUGGGUUUA-AGCUUGCUUGGCGGCGUCCUACUCUCACAGGGGGAAACCCCCGACUACCAUCGGCGCUGAAGAGCUUAACUUCCGUGUUCGGUA
.......(((-(((((((...-..)))))))))).-.....((((..(((((((...........((((....))))...........)))))))..)))).......(((....))).. ( -45.65)
>Blich.0 39551 119 + 4222334/38-158
AAAUAAAAAAGACCAGCUUAUAUAAGCUGGUCCUC-UUAGCGCUUGGCGGCGUCCUACUCUCACAGGGGGAAGCCCCCAACUACCAUCGGCGCUGAAGAGCUUAACUUCCGUGUUCGGCA
..........(((((((((....))))))))).((-(((((((((((.(((.(((..((.....))..))).))).))).........))))))).)))(((.(((......))).))). ( -45.20)
>Bhalo.0 28399 117 + 4202352/38-158
CAAUAAAAAAGCACAACCCGAUUGGAUUGUGCUUU---AUCGCUUGGCAGCGUCCUACUCUCGCAGGGGGAAGCCCCCAACUACCAUCGGCGCUGAAGAGCUUAACGACCGUGUUCGGCA
.......(((((((((.((....)).)))))))))---...((((..(((((((...........((((....))))...........)))))))..)))).....(.(((....)))). ( -42.45)
>Bclau.0 16731 120 + 4303871/38-158
CCAUAACAAAAAAGACACCUAUUCAGGUGUCUUUAAUAUUUGCCCGGCAACGUCCUACUCUCACAGGAGGAAGCCUCCAACUACCAUCGGCGCAAAAGAGCUUAACGGCCGUGUUCGGCA
..........((((((((((....))))))))))....((((((((....)..............(((((...)))))..........)).)))))...........((((....)))). ( -36.80)
>consensus
AAACAAAAAAACACAACUCAAAUGAGUUGUGUUUU_UAAUUGCUUGGCGACGUCCUACUCUCACAGGGGGAAGCCCCCAACUACCAUCGGCGCUAAAGAGCUUAACUUCCGUGUUCGGCA
........(((((((((((....))))))))))).......(((..((.(((.............(((((...)))))..........(((........))).......)))))..))). (-30.62 = -28.10 +  -2.52)

alignment

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secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:28:00 2006