Locus 142

Sequence ID	Bhalo.0
Location	2,041,936 – 2,042,056
Length	120
Max. P	0.983143

overview

Window 0

Location	2,041,936 – 2,042,056
Length	120
Sequences	6
Columns	120
Reading direction	forward
Mean pairwise identity	83.78
Mean single sequence MFE	-36.90
Consensus MFE	-34.29
Energy contribution	-32.18
Covariance contribution	-2.10
Combinations/Pair	1.31
Mean z-score	-2.49
Structure conservation index	0.93
SVM decision value	1.93
SVM RNA-class probability	0.983143
Prediction	RNA

Download alignment: ClustalW | MAF

>Bhalo.0 2041936 120 + 4202352/0-120
AUUGAAUCAUCCUCGUUAGGUGAGGCUCCUGUGCUGGAGAUACGCUGCUGCCCAAAAACGUCCAAAGACGCCAAUGGGUCAACAGAAACCAUCGACAUAAGGUGGUUUUUAACGUAGCUG
..........(((((.....)))))((((......))))....(((((.(((((....((((....))))....)))))....((((((((((.......))))))))))...))))).. ( -39.00)
>Bclau.0 3492933 120 - 4303871/0-120
ACGAUAUAUUCCUCGUUAGGUGAGGCUCCUGUGCAGGAGAUACGCUGCUACCCAAAAAUGUCCAAAGACGCCAAUGGGUCAACAGAAACCAUCGACAUAAGGUGGUUUUUAAUGUAGCUG
..........(((((.....)))))(((((....)))))....(((((.(((((....((((....))))....)))))....((((((((((.......))))))))))...))))).. ( -37.80)
>Bsubt.0 1394917 119 + 4214630/0-120
CAAUUAGGAACUUCGUUAGGUGAGGCUCCUGUAU-GGAGAUACGCUGCUGCCCAAAAAUGUCCAAAGACGCCAAUGGGUCAACAGAAAUCAUCGACAUAAGGUGAUUUUUAAUGCAGCUG
.....((((.(((((.....))))).))))((((-....))))(((((.(((((....((((....))))....)))))....((((((((((.......))))))))))...))))).. ( -36.60)
>Blich.0 1419296 119 + 4222334/0-120
AAAUACAGCUCUUCGUUAGGUGAGGCUCCUGUAU-GGAGAUACGCUGCUGCCCAAAAAUGUCCAAAGACGCCAAUGGGUCAACAGAAAUCAUCGAUCUAAGGUGAUUUUUAAUGCAGCUG
.........(((((((((((.......)))).))-)))))...(((((.(((((....((((....))))....)))))....((((((((((.......))))))))))...))))).. ( -36.60)
>Banth.0 1510394 119 + 5227293/0-120
AAAAAUAAGUCUCUGUUAGGUGAGGCUCCUGUAU-AGAGAAAUGCUACUGCCCAAAAAUGUCGAGAGACGCCAAUGGGUCAACAGGAAUGAUCGAAUUAAGGUUUUUCUUAACGUAGCUG
.........(((((((((((.......)))).))-)))))...(((((.(((((....((((....))))....)))))....(((((.((((.......)))).)))))...))))).. ( -35.70)
>Bcere.0 1660585 119 + 5224283/0-120
AAAAAUAAGUCUCUGUUAGGUGAGGCUCCUGUAU-AGAGAAAUGCUACUGCCCAAAAAUGUCGAGAGACGCCAAUGGGUCAACAGGAAUGAUCGAAUUAAGGUUUUUCUUAACGUAGCUG
.........(((((((((((.......)))).))-)))))...(((((.(((((....((((....))))....)))))....(((((.((((.......)))).)))))...))))).. ( -35.70)
>consensus
AAAAAAAAAUCUUCGUUAGGUGAGGCUCCUGUAU_GGAGAUACGCUGCUGCCCAAAAAUGUCCAAAGACGCCAAUGGGUCAACAGAAAUCAUCGACAUAAGGUGAUUUUUAACGUAGCUG
.........(((((((((((.......)))).)).)))))...(((((.(((((....((((....))))....)))))....((((((((((.......))))))))))...))))).. (-34.29 = -32.18 +  -2.10)

alignment

secondary structure

dotplot

Window 1

Location	2,041,936 – 2,042,054
Length	118
Sequences	6
Columns	120
Reading direction	forward
Mean pairwise identity	83.77
Mean single sequence MFE	-32.10
Consensus MFE	-28.67
Energy contribution	-26.90
Covariance contribution	-1.77
Combinations/Pair	1.35
Mean z-score	-1.62
Structure conservation index	0.89
SVM decision value	0.54
SVM RNA-class probability	0.773493
Prediction	RNA

Download alignment: ClustalW | MAF

>Bhalo.0 2041936 118 + 4202352/40-160
UACGCUGCUGCCCAAAAACGUCCAAAGACGCCAAUGGGUCAACAGAAACCAUCGACAUAAGGUGGUUUUUAACGUAGCUGGCU--UCGUCCUAUGCCGCACAGUGCUAAAGCUCUACGAA
...(((((.(((((....((((....))))....)))))....((((((((((.......))))))))))...))))).(((.--.........)))....((.((....)).))..... ( -35.10)
>Bclau.0 3492933 118 - 4303871/40-160
UACGCUGCUACCCAAAAAUGUCCAAAGACGCCAAUGGGUCAACAGAAACCAUCGACAUAAGGUGGUUUUUAAUGUAGCUGGCA--AUAGCCUAUGCCGCACAGUGCUAAAGCUCUACGAA
...(((((.(((((....((((....))))....)))))....((((((((((.......))))))))))...))))).((((--........))))....((.((....)).))..... ( -34.10)
>Bsubt.0 1394917 120 + 4214630/40-160
UACGCUGCUGCCCAAAAAUGUCCAAAGACGCCAAUGGGUCAACAGAAAUCAUCGACAUAAGGUGAUUUUUAAUGCAGCUGGAUGCUUGUCCUAUGCCAUACAGUGCUAAAGCUCUACGAU
...(((((.(((((....((((....))))....)))))....((((((((((.......))))))))))...)))))((((.((((......((.....))......)))))))).... ( -32.80)
>Blich.0 1419296 118 + 4222334/40-160
UACGCUGCUGCCCAAAAAUGUCCAAAGACGCCAAUGGGUCAACAGAAAUCAUCGAUCUAAGGUGAUUUUUAAUGCAGCUGCAU--GCUGCCUAUGCCAUACAGUGCUAAAGCUCUACGAU
...(((((.(((((....((((....))))....)))))....((((((((((.......))))))))))...))))).((((--(.....))))).....((.((....)).))..... ( -32.20)
>Banth.0 1510394 119 + 5227293/40-160
AAUGCUACUGCCCAAAAAUGUCGAGAGACGCCAAUGGGUCAACAGGAAUGAUCGAAUUAAGGUUUUUCUUAACGUAGCUGGUAAUGUA-CCUAUGCUAUACAGUGCUAAAACUCGGCGAG
...(((((.(((((....((((....))))....)))))....(((((.((((.......)))).)))))...))))).((((...))-))..((((....(((......))).)))).. ( -29.20)
>Bcere.0 1660585 119 + 5224283/40-160
AAUGCUACUGCCCAAAAAUGUCGAGAGACGCCAAUGGGUCAACAGGAAUGAUCGAAUUAAGGUUUUUCUUAACGUAGCUGGUAAUGUA-CCUAUGCUAUACAGUGCUAAAACUCGGCGAG
...(((((.(((((....((((....))))....)))))....(((((.((((.......)))).)))))...))))).((((...))-))..((((....(((......))).)))).. ( -29.20)
>consensus
UACGCUGCUGCCCAAAAAUGUCCAAAGACGCCAAUGGGUCAACAGAAAUCAUCGACAUAAGGUGAUUUUUAACGUAGCUGGAA__GUA_CCUAUGCCAUACAGUGCUAAAGCUCUACGAA
...(((((.(((((....((((....))))....)))))....((((((((((.......))))))))))...)))))((((............))))...(((......)))....... (-28.67 = -26.90 +  -1.77)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:27:58 2006