Locus 140

Sequence ID Bsubt.0
Location 1,783,825 – 1,783,935
Length 110
Max. P 0.912041
window941

overview

Window 1

Location 1,783,825 – 1,783,935
Length 110
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 67.81
Mean single sequence MFE -29.32
Consensus MFE -15.67
Energy contribution -15.40
Covariance contribution -0.27
Combinations/Pair 1.38
Mean z-score -1.71
Structure conservation index 0.53
SVM decision value 1.08
SVM RNA-class probability 0.912041
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 1783825 110 - 4214630/23-143
CUUCUCCCAUCCAGACUUUCACUGUCGGCUUCAGC-UUAAACUGAAUCCACCGC----GUGC-UUAUGCACA--CGGGUCACGGGCUCUAAAGCAA--AUGUGCUUUACUACCGCCGGUC
......((.....(((..........((.(((((.-.....))))).)).(((.----((((-....)))).--)))))).(((....(((((((.--...)))))))...)))..)).. ( -33.80)
>Blich.0 1813934 116 - 4222334/23-143
CUUCUCCCAUCCAGACUUUCACUGUCGGCUUCAGCUUUUCACUGAAUCCACCGC---UUUGCACGAAGCACA-GCGGGUCACGGGCUCUAAAGCUGUCUCUCGCUUUAUUACCGCCGGUC
......((.....(((..........((.(((((.......))))).)).((((---(.(((.....))).)-))))))).(((....((((((........))))))...)))..)).. ( -33.00)
>Bhalo.0 1634620 113 + 4202352/23-143
CUUCUCCCAUCCAGACUUUCACUGUCGGUCCCGGAUUUUCACCAGGUCCACCGC---UUACUGAUAUCAGCAACCGGGUCACGGACUAAGAAGC----AUUCGCUUCAUCACCGCCGGUC
..........((.(((.......)))))..((((..........(((((.(((.---((.(((....))).)).))).....)))))..(((((----....))))).......)))).. ( -29.20)
>Bclau.0 1930366 116 + 4303871/23-143
CUUCUCCCAUCCAGACUAUUACUGUCGGCUCUGGAUUUGCACCAGAUCCACCGCACGCACGAGUAAUGCUUAUGCGGGUCACGGACUAAAAGGC----GAUUGCCUUAUCACCGCCGGUC
......((.....((((.....((.(((...((((((((...)))))))))))))((((..((.....))..)))))))).(((.....(((((----....)))))....)))..)).. ( -34.10)
>Banth.0 1422570 105 + 5227293/23-143
CUUCUCCCAUCCAGACUAU-ACUGUCGGCUUUGGAAUCACACCAAAUCC----------UGCCUUAACGGCUCGCGGGCUUAGAACAAAAUCAU----AAAUAGUUCAUCACCGCCGGUC
.............(((...-...)))((((((((.......)))))...----------.))).....((((.((((.....((((........----.....))))....)))).)))) ( -22.42)
>Bcere.0 1576748 105 + 5224283/23-143
CUUCUCCCAUCCAGACUGU-ACUGUCGGCUUUGGAAUCACACCAAAUCC----------UGCCUUAACGGCUCGCGGGCUUAGAACAAAAUCAC----AUAUAGUUCAUCACCGCCGGUC
.........(((((((((.-.....))).)))))).....(((......----------.(((.....)))..((((.....((((........----.....))))....)))).))). ( -23.42)
>consensus
CUUCUCCCAUCCAGACUUUCACUGUCGGCUUCGGAUUUACACCAAAUCCACCGC_____UGCCUUAACCGCA_GCGGGUCACGGACUAAAAAGC____AUUUGCUUCAUCACCGCCGGUC
......((.....(((.......)))((.(((((.......))))).))........................(((((((...)))...(((((........)))))....)))).)).. (-15.67 = -15.40 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:27:50 2006