Locus 136

Sequence ID Banth.0
Location 747,188 – 747,289
Length 101
Max. P 0.751017
window925 window926

overview

Window 5

Location 747,188 – 747,289
Length 101
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 89.44
Mean single sequence MFE -35.50
Consensus MFE -34.49
Energy contribution -33.60
Covariance contribution -0.89
Combinations/Pair 1.07
Mean z-score -1.33
Structure conservation index 0.97
SVM decision value 0.48
SVM RNA-class probability 0.751017
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 747188 101 + 5227293
AAUGGAGGAGGUAGAGGGAUUCGAACCCCCGCGCGAUUCUCACCGCCUGUCGGUUUUCAAGACCGAUCCCUUCAGCCGAACUUGGGUAUACCUCCGAGACA
..(((((((((..(.((((.(((..(....)..))).)))).)..)))(((((((.....))))))).))))))......((((((......))))))... ( -34.10)
>Bcere.0 823880 101 + 5224283
AAUGGAGGAGGUAGAGGGAUUCGAACCCCCGCGCGAUUCUCACCGCCUGUCGGUUUUCAAGACCGAUCCCUUCAGCCGAACUUGGGUAUACCUCCGAGACA
..(((((((((..(.((((.(((..(....)..))).)))).)..)))(((((((.....))))))).))))))......((((((......))))))... ( -34.10)
>Bhalo.0 45473 101 + 4202352
AAUGGCGGAGGAGGAGGGAUUCGAACCCCCGCGCGGUUUAACCCGCCUGUCGGUUUUCAAGACCGAUCCCUUCAGCCAGACUUGGGUACUCCUCCAUAACG
.((((.((((..(((((((...........(((.((.....)))))...((((((.....))))))))))))).(((.......))).)))).)))).... ( -38.30)
>consensus
AAUGGAGGAGGUAGAGGGAUUCGAACCCCCGCGCGAUUCUCACCGCCUGUCGGUUUUCAAGACCGAUCCCUUCAGCCGAACUUGGGUAUACCUCCGAGACA
......(((((((((((((..........((.(((........))).))((((((.....))))))))))))..(((.......))).)))))))...... (-34.49 = -33.60 +  -0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 747,188 – 747,289
Length 101
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 89.44
Mean single sequence MFE -35.50
Consensus MFE -34.49
Energy contribution -33.60
Covariance contribution -0.89
Combinations/Pair 1.07
Mean z-score -1.33
Structure conservation index 0.97
SVM decision value 0.48
SVM RNA-class probability 0.751017
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 747188 101 + 5227293/0-101
AAUGGAGGAGGUAGAGGGAUUCGAACCCCCGCGCGAUUCUCACCGCCUGUCGGUUUUCAAGACCGAUCCCUUCAGCCGAACUUGGGUAUACCUCCGAGACA
..(((((((((..(.((((.(((..(....)..))).)))).)..)))(((((((.....))))))).))))))......((((((......))))))... ( -34.10)
>Bcere.0 823880 101 + 5224283/0-101
AAUGGAGGAGGUAGAGGGAUUCGAACCCCCGCGCGAUUCUCACCGCCUGUCGGUUUUCAAGACCGAUCCCUUCAGCCGAACUUGGGUAUACCUCCGAGACA
..(((((((((..(.((((.(((..(....)..))).)))).)..)))(((((((.....))))))).))))))......((((((......))))))... ( -34.10)
>Bhalo.0 45473 101 + 4202352/0-101
AAUGGCGGAGGAGGAGGGAUUCGAACCCCCGCGCGGUUUAACCCGCCUGUCGGUUUUCAAGACCGAUCCCUUCAGCCAGACUUGGGUACUCCUCCAUAACG
.((((.((((..(((((((...........(((.((.....)))))...((((((.....))))))))))))).(((.......))).)))).)))).... ( -38.30)
>consensus
AAUGGAGGAGGUAGAGGGAUUCGAACCCCCGCGCGAUUCUCACCGCCUGUCGGUUUUCAAGACCGAUCCCUUCAGCCGAACUUGGGUAUACCUCCGAGACA
......(((((((((((((..........((.(((........))).))((((((.....))))))))))))..(((.......))).)))))))...... (-34.49 = -33.60 +  -0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:27:39 2006