Locus 135

Sequence ID Banth.0
Location 747,064 – 747,175
Length 111
Max. P 0.538943
window923 window924

overview

Window 3

Location 747,064 – 747,175
Length 111
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 78.60
Mean single sequence MFE -35.30
Consensus MFE -33.46
Energy contribution -31.65
Covariance contribution -1.81
Combinations/Pair 1.24
Mean z-score -0.24
Structure conservation index 0.95
SVM decision value 0.01
SVM RNA-class probability 0.538943
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 747064 111 + 5227293
GUUCAAAUCCUGUCUUCCCGAUAUUACCAAAAAA-------CAUGGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCCUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGGCUCCAC
..........((((.....))))...........-------..((((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))). ( -33.40)
>Bcere.0 823757 110 + 5224283
GUUCAAAUCCUGUCUUCCCGAUAUU-CCCAAAAA-------CAUGGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCCUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGGCUCCAC
...........(..(((((.....(-((((....-------..)))))....(((...))))))))..)((.(((...))).)).((((.(.(((((.......))))).).)))).. ( -34.50)
>Bsubt.0 96109 107 + 4214630
GUUCGAAUCCUGUCUUCCCGACCAUUUUUU-----------UAUGGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGGCUCCAC
..((((((((((.(((((...((((.....-----------.)))).((((((((...))))))(((((....)))))....)).))))).))).)))))))..((....))...... ( -34.70)
>Bhalo.0 744458 118 - 4202352
GUCAAAAGUGUGACUUUUCGUUAUAAUAAAGAAUGUCGAAUUCAGGGGCAUUAGCUCAGCUGGGAGAGCGCUUCGCUGGCAGCGAAGAGGUCAGCGGUUCGAGCCCGCUAUGCUCCAC
........((((((.....)))))).....((((.....)))).(((((((.(((...(((.(((..((.((((((.....))))))......))..))).)))..)))))))))).. ( -38.60)
>consensus
GUUCAAAUCCUGUCUUCCCGAUAUUACCAAAAAA_______CAUGGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCCUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGGCUCCAC
..........((((.....)))).....................(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).. (-33.46 = -31.65 +  -1.81)

alignment

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secondary structure

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dotplot

Postscript

Window 4

Location 747,064 – 747,175
Length 111
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 78.60
Mean single sequence MFE -35.30
Consensus MFE -33.46
Energy contribution -31.65
Covariance contribution -1.81
Combinations/Pair 1.24
Mean z-score -0.24
Structure conservation index 0.95
SVM decision value 0.01
SVM RNA-class probability 0.538943
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 747064 111 + 5227293/0-118
GUUCAAAUCCUGUCUUCCCGAUAUUACCAAAAAA-------CAUGGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCCUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGGCUCCAC
..........((((.....))))...........-------..((((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))). ( -33.40)
>Bcere.0 823757 110 + 5224283/0-118
GUUCAAAUCCUGUCUUCCCGAUAUU-CCCAAAAA-------CAUGGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCCUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGGCUCCAC
...........(..(((((.....(-((((....-------..)))))....(((...))))))))..)((.(((...))).)).((((.(.(((((.......))))).).)))).. ( -34.50)
>Bsubt.0 96109 107 + 4214630/0-118
GUUCGAAUCCUGUCUUCCCGACCAUUUUUU-----------UAUGGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGGCUCCAC
..((((((((((.(((((...((((.....-----------.)))).((((((((...))))))(((((....)))))....)).))))).))).)))))))..((....))...... ( -34.70)
>Bhalo.0 744458 118 - 4202352/0-118
GUCAAAAGUGUGACUUUUCGUUAUAAUAAAGAAUGUCGAAUUCAGGGGCAUUAGCUCAGCUGGGAGAGCGCUUCGCUGGCAGCGAAGAGGUCAGCGGUUCGAGCCCGCUAUGCUCCAC
........((((((.....)))))).....((((.....)))).(((((((.(((...(((.(((..((.((((((.....))))))......))..))).)))..)))))))))).. ( -38.60)
>consensus
GUUCAAAUCCUGUCUUCCCGAUAUUACCAAAAAA_______CAUGGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCCUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGGCUCCAC
..........((((.....)))).....................(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).. (-33.46 = -31.65 +  -1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:27:38 2006