Locus 132

Sequence ID Banth.0
Location 746,424 – 746,543
Length 119
Max. P 0.998461
window911 window912 window913 window914 window915 window916

overview

Window 1

Location 746,424 – 746,543
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 53.49
Mean single sequence MFE -39.10
Consensus MFE -20.93
Energy contribution -19.30
Covariance contribution -1.63
Combinations/Pair 1.60
Mean z-score -1.46
Structure conservation index 0.54
SVM decision value 1.33
SVM RNA-class probability 0.942496
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 746424 119 + 5227293/0-120
CGGCGGUUCGAUCCCGUCAUCCUCCACCAUUCUUAAUUAAUGG-GCUAUAGCCAAGCGGUAAGGCAACGGACUUUGACUCCGUCAUGCGCUGGUUCGAAUCCAGCUAGCCCAGCCAUUAA
.((((((..(((......)))....)))............(((-((((..(((....)))...((((((((.......)))))..)))(((((.......)))))))))))))))..... ( -37.50)
>Bcere.0 823025 119 + 5224283/0-120
CGGCAGUUCGAAUCUGCCCCCCUCCACCAUUCUUAAUUAAUGG-GCUAUAGCCAAGCGGUAAGGCAACGGACUUUGACUCCGUCAUGCGCUGGUUCGAAUCCAGCUAGCCCAGCCAUUAA
.(((((.......)))))...............((((...(((-((((..(((....)))...((((((((.......)))))..)))(((((.......))))))))))))...)))). ( -38.00)
>Bhalo.0 1024949 116 + 4202352/0-120
CGCUGGUUCGAAUCCAGCUAGCCCAGCCAAUAAGCGGAAGUAGUUCAGUGGUAGAACACCACCUUGCCAAGGUGGGGGUCGCGGGUUCG---AAUCCCGUCUUCCGCUCCAAAGCUU-UG
.(((((.......)))))......(((.....((((((((..((((.......)))).((((((.....)))))).....(((((....---...))))))))))))).....))).-.. ( -42.00)
>Bclau.0 1447665 116 + 4303871/0-120
CCCUGGUUCGAAUCCAGGUAGCCCAGCCA-UAUGCGGAAGUAGUUCAGUGGUAGAAUAUCACCUUGCCAAGGUGGGGGUCGCGGGUUCG---AAUCCCGUCUUCCGCUUUAGUUUUUACG
....(((((((((((..(..((((.((((-(.(((....))).....)))))......((((((.....))))))))))..))))))))---))))........................ ( -38.90)
>consensus
CGCCGGUUCGAAUCCAGCUACCCCAACCAUUAUGAAGAAAUAG_GCAAUAGCAAAACAGCAACGCAACAAACUGGGACUCCCGCAUGCG___AAUCCAAUCCACCGAGCCAAGCCAUUAA
.(((((.......)))))...............(((((..((((((((((((.....))))))))))))((((((((.................)))))))))))))............. (-20.93 = -19.30 +  -1.63)

alignment

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secondary structure

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dotplot

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Window 2

Location 746,424 – 746,543
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 53.49
Mean single sequence MFE -40.27
Consensus MFE -18.77
Energy contribution -15.40
Covariance contribution -3.37
Combinations/Pair 1.68
Mean z-score -1.22
Structure conservation index 0.47
SVM decision value 0.60
SVM RNA-class probability 0.795667
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 746424 119 + 5227293/0-120
UUAAUGGCUGGGCUAGCUGGAUUCGAACCAGCGCAUGACGGAGUCAAAGUCCGUUGCCUUACCGCUUGGCUAUAGC-CCAUUAAUUAAGAAUGGUGGAGGAUGACGGGAUCGAACCGCCG
(((((...((((((((((((.......)))))....((((((.......))))))(((.........)))..))))-)))...)))))....(((((..(((......)))...))))). ( -39.80)
>Bcere.0 823025 119 + 5224283/0-120
UUAAUGGCUGGGCUAGCUGGAUUCGAACCAGCGCAUGACGGAGUCAAAGUCCGUUGCCUUACCGCUUGGCUAUAGC-CCAUUAAUUAAGAAUGGUGGAGGGGGGCAGAUUCGAACUGCCG
...(((((..(((..(((((.......)))))(((..(((((.......))))))))......)))..)))))..(-((....((((....))))....)))(((((.......))))). ( -42.10)
>Bhalo.0 1024949 116 + 4202352/0-120
CA-AAGCUUUGGAGCGGAAGACGGGAUU---CGAACCCGCGACCCCCACCUUGGCAAGGUGGUGUUCUACCACUGAACUACUUCCGCUUAUUGGCUGGGCUAGCUGGAUUCGAACCAGCG
..-.((((...(((((((((..(((..(---((......)))..)))....(((...(((((((...)))))))...))))))))))))...))))......(((((.......))))). ( -45.60)
>Bclau.0 1447665 116 + 4303871/0-120
CGUAAAAACUAAAGCGGAAGACGGGAUU---CGAACCCGCGACCCCCACCUUGGCAAGGUGAUAUUCUACCACUGAACUACUUCCGCAUA-UGGCUGGGCUACCUGGAUUCGAACCAGGG
.............(((((((..(((..(---((......)))..)))..........((((......)))).........)))))))...-((((...))))(((((.......))))). ( -33.60)
>consensus
CUAAAGGCUGGGAGAGCAAGACGCGAAC___CGAACCACCGACCCAAACCCCGGCAACGUACCGCUCGACCACAGA_CCACUAACGAAGAAUGGCGGAGCUAGCCGGAUUCGAACCACCG
.............(((((((..(((..........)))..((((..((((((...))))))..)))).............)))))))...............(((((.......))))). (-18.77 = -15.40 +  -3.37)

alignment

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secondary structure

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dotplot

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Window 3

Location 746,424 – 746,537
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 67.18
Mean single sequence MFE -40.58
Consensus MFE -36.20
Energy contribution -32.88
Covariance contribution -3.32
Combinations/Pair 1.50
Mean z-score -2.07
Structure conservation index 0.89
SVM decision value 2.93
SVM RNA-class probability 0.997795
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 746424 113 + 5227293/200-320
GCUCACCAUUUUAACAAAAUAU--GCGGGUGUGGCGGAAUUGGCAGACGCACUAGACUUAGGAUCUAGCGCC---UUU--GGCGUGGGGGUUCGACUCCCUUCACCCGCACUUUUAAUAA
................(((..(--(((((((..........(.((((.((.((((((....).))))).)).---)))--).)..(((((.....)))))..))))))))..)))..... ( -36.50)
>Bcere.0 823025 113 + 5224283/200-320
GCUCACCAUUUUAACAAAAUAU--GCGGGUGUGGCGGAAUUGGCAGACGCACUAGACUUAGGAUCUAGCGCC---UUU--GGCGUGGGGGUUCGACUCCCUUCACCCGCACUUUUAAUAA
................(((..(--(((((((..........(.((((.((.((((((....).))))).)).---)))--).)..(((((.....)))))..))))))))..)))..... ( -36.50)
>Bsubt.0 95417 105 + 4214630/200-320
GCUCACCAUUUUA--------C--GCGGGUGUGGCGGAAUUGGCAGACGCGCUAGACUUAGGAUCUAGUGUC---UUUAUGACGUGGGGGUUCAAGUCCCUUCACCCGCAUUAU--AUAG
.............--------.--(((((((.((.(((.(((((...((((((((((....).))))))(((---.....))))))...).)))).))))).))))))).....--.... ( -36.10)
>Bhalo.0 1024949 114 + 4202352/200-320
AUCUUUCCACGUAAUUCCUU----GCCGGGGUGGUGGAAUUGGCAGACACACAGGACUUAAAAUCCUGCGGUAGGUGACUACCGUGCCGGUUCGAGUCCGGCCCUCGGCACCAU--UUUA
...................(----(((((((((((.(((((((((......(((((.......)))))((((((....))))))))))))))).)..)).)))).)))))....--.... ( -46.80)
>Bclau.0 1447665 118 + 4303871/200-320
AAAAUAAGUUGUAGUCCUAGAUAGGCCGGGGUGGUGGAAUUGGCAGACACACAGGACUUAAAAUCCUGCGGUAGGUGACUACCGUGCCGGUUCGAGUCCGGCCCUCGGCAUCUU--AUGA
...(((((.(((.(.(((....))).)(((.((((.(((((((((......(((((.......)))))((((((....))))))))))))))).)..))).)))...))).)))--)).. ( -47.00)
>consensus
GCUCACCAUUUUAACAAAAUAU__GCGGGUGUGGCGGAAUUGGCAGACGCACUAGACUUAGGAUCUAGCGCC___UUU_UGCCGUGGGGGUUCGAGUCCCUUCACCCGCACUUU__AUAA
........................(((((((..(((...........))).(((((.......)))))((((((....)))))).(((((.......))))))))))))........... (-36.20 = -32.88 +  -3.32)

alignment

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secondary structure

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dotplot

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Window 4

Location 746,424 – 746,537
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 67.18
Mean single sequence MFE -37.66
Consensus MFE -28.48
Energy contribution -25.68
Covariance contribution -2.80
Combinations/Pair 1.36
Mean z-score -2.16
Structure conservation index 0.76
SVM decision value 2.71
SVM RNA-class probability 0.996532
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 746424 113 + 5227293/200-320
UUAUUAAAAGUGCGGGUGAAGGGAGUCGAACCCCCACGCC--AAA---GGCGCUAGAUCCUAAGUCUAGUGCGUCUGCCAAUUCCGCCACACCCGC--AUAUUUUGUUAAAAUGGUGAGC
(((.((((((((((((((..(((.(.....).)))..(.(--(.(---.(((((((((.....))))))))).).)).)..........)))))))--)).))))).))).......... ( -37.20)
>Bcere.0 823025 113 + 5224283/200-320
UUAUUAAAAGUGCGGGUGAAGGGAGUCGAACCCCCACGCC--AAA---GGCGCUAGAUCCUAAGUCUAGUGCGUCUGCCAAUUCCGCCACACCCGC--AUAUUUUGUUAAAAUGGUGAGC
(((.((((((((((((((..(((.(.....).)))..(.(--(.(---.(((((((((.....))))))))).).)).)..........)))))))--)).))))).))).......... ( -37.20)
>Bsubt.0 95417 105 + 4214630/200-320
CUAU--AUAAUGCGGGUGAAGGGACUUGAACCCCCACGUCAUAAA---GACACUAGAUCCUAAGUCUAGCGCGUCUGCCAAUUCCGCCACACCCGC--G--------UAAAAUGGUGAGC
((((--.(.(((((((((..(((((.((......)).)))....(---(((.((((((.....))))))...)))).......))....)))))))--)--------).).))))..... ( -30.90)
>Bhalo.0 1024949 114 + 4202352/200-320
UAAA--AUGGUGCCGAGGGCCGGACUCGAACCGGCACGGUAGUCACCUACCGCAGGAUUUUAAGUCCUGUGUGUCUGCCAAUUCCACCACCCCGGC----AAGGAAUUACGUGGAAAGAU
....--....(((((.(((((((.......)))))..(((((.(((.....(((((((.....)))))))))).)))))..........)).))))----)................... ( -41.40)
>Bclau.0 1447665 118 + 4303871/200-320
UCAU--AAGAUGCCGAGGGCCGGACUCGAACCGGCACGGUAGUCACCUACCGCAGGAUUUUAAGUCCUGUGUGUCUGCCAAUUCCACCACCCCGGCCUAUCUAGGACUACAACUUAUUUU
....--.((((((((.(((((((.......)))))..(((((.(((.....(((((((.....)))))))))).)))))..........)).))))..)))).................. ( -41.60)
>consensus
UUAU__AAAGUGCGGGUGAAGGGACUCGAACCCCCACGCCA_AAA___GCCGCUAGAUCCUAAGUCUAGUGCGUCUGCCAAUUCCGCCACACCCGC__AUAUUGUAUUAAAAUGGUGAGC
...........(((((((..(((.......)))....(((((....)))))(((((((.....)))))))(((...........)))..)))))))........................ (-28.48 = -25.68 +  -2.80)

alignment

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secondary structure

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dotplot

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Window 5

Location 746,424 – 746,537
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 68.12
Mean single sequence MFE -40.94
Consensus MFE -36.20
Energy contribution -32.88
Covariance contribution -3.32
Combinations/Pair 1.50
Mean z-score -2.32
Structure conservation index 0.88
SVM decision value 3.02
SVM RNA-class probability 0.998166
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 746424 113 + 5227293/210-330
UUAACAAAAUAU--GCGGGUGUGGCGGAAUUGGCAGACGCACUAGACUUAGGAUCUAGCGCC---UUU--GGCGUGGGGGUUCGACUCCCUUCACCCGCACUUUUAAUAAAAUAACUCAU
......(((..(--(((((((..........(.((((.((.((((((....).))))).)).---)))--).)..(((((.....)))))..))))))))..)))............... ( -36.50)
>Bcere.0 823025 113 + 5224283/210-330
UUAACAAAAUAU--GCGGGUGUGGCGGAAUUGGCAGACGCACUAGACUUAGGAUCUAGCGCC---UUU--GGCGUGGGGGUUCGACUCCCUUCACCCGCACUUUUAAUAAAAUAACUCAU
......(((..(--(((((((..........(.((((.((.((((((....).))))).)).---)))--).)..(((((.....)))))..))))))))..)))............... ( -36.50)
>Bsubt.0 95417 105 + 4214630/210-330
UUA--------C--GCGGGUGUGGCGGAAUUGGCAGACGCGCUAGACUUAGGAUCUAGUGUC---UUUAUGACGUGGGGGUUCAAGUCCCUUCACCCGCAUUAU--AUAGGAUAACAGUU
...--------.--(((((((.((.(((.(((((...((((((((((....).))))))(((---.....))))))...).)))).))))).))))))).....--.............. ( -36.10)
>Bhalo.0 1024949 114 + 4202352/210-330
GUAAUUCCUU----GCCGGGGUGGUGGAAUUGGCAGACACACAGGACUUAAAAUCCUGCGGUAGGUGACUACCGUGCCGGUUCGAGUCCGGCCCUCGGCACCAU--UUUAGACAAGCUUU
.......(((----((..(((((((((((((((((......(((((.......)))))((((((....)))))))))))))))....(((.....)))))))))--))..).)))).... ( -47.00)
>Bclau.0 1447665 118 + 4303871/210-330
GUAGUCCUAGAUAGGCCGGGGUGGUGGAAUUGGCAGACACACAGGACUUAAAAUCCUGCGGUAGGUGACUACCGUGCCGGUUCGAGUCCGGCCCUCGGCAUCUU--AUGAAACGACAUGA
...(((........(((((((((((.(((((((((......(((((.......)))))((((((....))))))))))))))).)..)).)))).)))).((..--..))...))).... ( -48.60)
>consensus
UUAACAAAAUAU__GCGGGUGUGGCGGAAUUGGCAGACGCACUAGACUUAGGAUCUAGCGCC___UUU_UGCCGUGGGGGUUCGAGUCCCUUCACCCGCACUUU__AUAAAAUAACACAU
..............(((((((..(((...........))).(((((.......)))))((((((....)))))).(((((.......))))))))))))..................... (-36.20 = -32.88 +  -3.32)

alignment

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secondary structure

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dotplot

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Window 6

Location 746,424 – 746,537
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 68.12
Mean single sequence MFE -37.66
Consensus MFE -28.48
Energy contribution -25.68
Covariance contribution -2.80
Combinations/Pair 1.36
Mean z-score -2.51
Structure conservation index 0.76
SVM decision value 3.11
SVM RNA-class probability 0.998461
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 746424 113 + 5227293/210-330
AUGAGUUAUUUUAUUAAAAGUGCGGGUGAAGGGAGUCGAACCCCCACGCC--AAA---GGCGCUAGAUCCUAAGUCUAGUGCGUCUGCCAAUUCCGCCACACCCGC--AUAUUUUGUUAA
..............((((((((((((((..(((.(.....).)))..(.(--(.(---.(((((((((.....))))))))).).)).)..........)))))))--)).))))).... ( -36.70)
>Bcere.0 823025 113 + 5224283/210-330
AUGAGUUAUUUUAUUAAAAGUGCGGGUGAAGGGAGUCGAACCCCCACGCC--AAA---GGCGCUAGAUCCUAAGUCUAGUGCGUCUGCCAAUUCCGCCACACCCGC--AUAUUUUGUUAA
..............((((((((((((((..(((.(.....).)))..(.(--(.(---.(((((((((.....))))))))).).)).)..........)))))))--)).))))).... ( -36.70)
>Bsubt.0 95417 105 + 4214630/210-330
AACUGUUAUCCUAU--AUAAUGCGGGUGAAGGGACUUGAACCCCCACGUCAUAAA---GACACUAGAUCCUAAGUCUAGCGCGUCUGCCAAUUCCGCCACACCCGC--G--------UAA
..............--...(((((((((..(((((.((......)).)))....(---(((.((((((.....))))))...)))).......))....)))))))--)--------).. ( -30.00)
>Bhalo.0 1024949 114 + 4202352/210-330
AAAGCUUGUCUAAA--AUGGUGCCGAGGGCCGGACUCGAACCGGCACGGUAGUCACCUACCGCAGGAUUUUAAGUCCUGUGUGUCUGCCAAUUCCACCACCCCGGC----AAGGAAUUAC
....((((((....--.(((((..(((.(((((.......)))))..(((((.(((.....(((((((.....)))))))))).)))))..))))))))....)))----)))....... ( -42.40)
>Bclau.0 1447665 118 + 4303871/210-330
UCAUGUCGUUUCAU--AAGAUGCCGAGGGCCGGACUCGAACCGGCACGGUAGUCACCUACCGCAGGAUUUUAAGUCCUGUGUGUCUGCCAAUUCCACCACCCCGGCCUAUCUAGGACUAC
....(((.(.....--.((((((((.(((((((.......)))))..(((((.(((.....(((((((.....)))))))))).)))))..........)).))))..))))).)))... ( -42.50)
>consensus
AAAAGUUAUUUUAU__AAAGUGCGGGUGAAGGGACUCGAACCCCCACGCCA_AAA___GCCGCUAGAUCCUAAGUCUAGUGCGUCUGCCAAUUCCGCCACACCCGC__AUAUUGUAUUAA
.....................(((((((..(((.......)))....(((((....)))))(((((((.....)))))))(((...........)))..))))))).............. (-28.48 = -25.68 +  -2.80)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:27:32 2006