Locus 130

Sequence ID Banth.0
Location 741,405 – 741,459
Length 54
Max. P 0.557543
window887 window888

overview

Window 7

Location 741,405 – 741,459
Length 54
Sequences 5
Columns 55
Reading direction forward
Mean pairwise identity 63.97
Mean single sequence MFE -11.98
Consensus MFE -2.66
Energy contribution -3.94
Covariance contribution 1.28
Combinations/Pair 1.18
Mean z-score -2.50
Structure conservation index 0.22
SVM decision value 0.05
SVM RNA-class probability 0.557543
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 741405 54 + 5227293
GUUGACAUCGAAA-AAUGAAGAUGUUAAUAUGAUGAAGUCGCUUCUGAGCGGCGG
(((((((((....-......)))))))))........((((((....)))))).. ( -17.00)
>Bcere.0 330645 54 + 5224283
GUUGACAUUGAAA-GAUGAAAAUGUUAACAUAAGGAAGUCGCAAAUGAGCGACUA
(((((((((....-......))))))))).......((((((......)))))). ( -17.40)
>Bhalo.0 50410 55 + 4202352
GUUGACAUAAAUACGAGCGACAUGUUAUAUUAAUCUAGUCGCUAAAAAACGACGC
((((.(........)((((((................))))))......)))).. (  -8.69)
>Blich.0 920276 54 + 4222334
UUUGACACUUCUC-GUUGAAAAUGUUAUACUAAUAAAGUCGCUUCGGACAGAAGC
..(((((.(((..-...)))..))))).............(((((.....))))) (  -8.50)
>Bsubt.0 945818 54 + 4214630
UUUGACAAAAGAA-AGUCAAAAUGUUAUAUUAAUAAAGUCGCUUCAACAAGAAGU
((((((.......-.))))))...................(((((.....))))) (  -8.30)
>consensus
GUUGACAUAAAAA_GAUGAAAAUGUUAUAAUAAUAAAGUCGCUUCAGAACGACGC
..(((((((...........)))))))..........((((........)))).. ( -2.66 =  -3.94 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 741,405 – 741,459
Length 54
Sequences 5
Columns 55
Reading direction forward
Mean pairwise identity 63.97
Mean single sequence MFE -11.98
Consensus MFE -2.66
Energy contribution -3.94
Covariance contribution 1.28
Combinations/Pair 1.18
Mean z-score -2.50
Structure conservation index 0.22
SVM decision value 0.05
SVM RNA-class probability 0.557543
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 741405 54 + 5227293/0-55
GUUGACAUCGAAA-AAUGAAGAUGUUAAUAUGAUGAAGUCGCUUCUGAGCGGCGG
(((((((((....-......)))))))))........((((((....)))))).. ( -17.00)
>Bcere.0 330645 54 + 5224283/0-55
GUUGACAUUGAAA-GAUGAAAAUGUUAACAUAAGGAAGUCGCAAAUGAGCGACUA
(((((((((....-......))))))))).......((((((......)))))). ( -17.40)
>Bhalo.0 50410 55 + 4202352/0-55
GUUGACAUAAAUACGAGCGACAUGUUAUAUUAAUCUAGUCGCUAAAAAACGACGC
((((.(........)((((((................))))))......)))).. (  -8.69)
>Blich.0 920276 54 + 4222334/0-55
UUUGACACUUCUC-GUUGAAAAUGUUAUACUAAUAAAGUCGCUUCGGACAGAAGC
..(((((.(((..-...)))..))))).............(((((.....))))) (  -8.50)
>Bsubt.0 945818 54 + 4214630/0-55
UUUGACAAAAGAA-AGUCAAAAUGUUAUAUUAAUAAAGUCGCUUCAACAAGAAGU
((((((.......-.))))))...................(((((.....))))) (  -8.30)
>consensus
GUUGACAUAAAAA_GAUGAAAAUGUUAUAAUAAUAAAGUCGCUUCAGAACGACGC
..(((((((...........)))))))..........((((........)))).. ( -2.66 =  -3.94 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:27:11 2006