Locus 128

Sequence ID Banth.0
Location 537,910 – 537,975
Length 65
Max. P 0.977667
window881 window882

overview

Window 1

Location 537,910 – 537,975
Length 65
Sequences 6
Columns 65
Reading direction forward
Mean pairwise identity 93.13
Mean single sequence MFE -20.30
Consensus MFE -18.83
Energy contribution -18.83
Covariance contribution -0.00
Combinations/Pair 1.06
Mean z-score -1.65
Structure conservation index 0.93
SVM decision value 1.80
SVM RNA-class probability 0.977667
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 537910 65 + 5227293
AUUGGUAGAGCAACUGACUUGUAAUCAGUAGGUUGGGGGUUCAAGUCCUCUAGCCGGCACCAUGU
..((((...((.(((((.......))))).(((((((((.......))))))))).))))))... ( -22.10)
>Bcere.0 610412 65 + 5224283
AUUGGUAGAGCAACUGACUUGUAAUCAGUAGGUUGGGGGUUCAAGUCCUCUAGCCGGCACCAUGU
..((((...((.(((((.......))))).(((((((((.......))))))))).))))))... ( -22.10)
>Bhalo.0 39108 65 - 4202352
AUUGGUAGAGCAACUGACUUGUAAUCAGUAGGUUGGGGGUUCAAGUCCUCUGGCCGGCAUCUUGG
......(((((.(((((.......))))).(((..((((.......))))..))).)).)))... ( -20.30)
>Bclau.0 22332 65 - 4303871
AUUGGUAGAGCAACUGACUUGUAAUCAGUAGGUUGGGGGUUCAAGUCCUCUGGCCGGCAUAGCGG
..((.((..((.(((((.......))))).(((..((((.......))))..))).)).)).)). ( -20.10)
>Bsubt.0 951559 65 + 4214630
AUUGGUAAAGCAACUGACUUGUAAUCAGUAGGUUGGGGGUUCAAGUCCUCUUGCCGGCACUGUUU
.........((.(((((.......))))).(((.(((((.......))))).))).))....... ( -16.50)
>Blich.0 926182 65 + 4222334
AUUGGUAGAGCAACUGACUUGUAAUCAGUAGGUUGGGGGUUCAAGUCCUCUGGCCGGCACUGUUU
.....(((.((.(((((.......))))).(((..((((.......))))..))).)).)))... ( -20.70)
>consensus
AUUGGUAGAGCAACUGACUUGUAAUCAGUAGGUUGGGGGUUCAAGUCCUCUGGCCGGCACCGUGU
.........((.(((((.......))))).(((((((((.......))))))))).))....... (-18.83 = -18.83 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 537,910 – 537,975
Length 65
Sequences 6
Columns 65
Reading direction forward
Mean pairwise identity 93.13
Mean single sequence MFE -20.30
Consensus MFE -18.83
Energy contribution -18.83
Covariance contribution -0.00
Combinations/Pair 1.06
Mean z-score -1.65
Structure conservation index 0.93
SVM decision value 1.80
SVM RNA-class probability 0.977667
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 537910 65 + 5227293/0-65
AUUGGUAGAGCAACUGACUUGUAAUCAGUAGGUUGGGGGUUCAAGUCCUCUAGCCGGCACCAUGU
..((((...((.(((((.......))))).(((((((((.......))))))))).))))))... ( -22.10)
>Bcere.0 610412 65 + 5224283/0-65
AUUGGUAGAGCAACUGACUUGUAAUCAGUAGGUUGGGGGUUCAAGUCCUCUAGCCGGCACCAUGU
..((((...((.(((((.......))))).(((((((((.......))))))))).))))))... ( -22.10)
>Bhalo.0 39108 65 - 4202352/0-65
AUUGGUAGAGCAACUGACUUGUAAUCAGUAGGUUGGGGGUUCAAGUCCUCUGGCCGGCAUCUUGG
......(((((.(((((.......))))).(((..((((.......))))..))).)).)))... ( -20.30)
>Bclau.0 22332 65 - 4303871/0-65
AUUGGUAGAGCAACUGACUUGUAAUCAGUAGGUUGGGGGUUCAAGUCCUCUGGCCGGCAUAGCGG
..((.((..((.(((((.......))))).(((..((((.......))))..))).)).)).)). ( -20.10)
>Bsubt.0 951559 65 + 4214630/0-65
AUUGGUAAAGCAACUGACUUGUAAUCAGUAGGUUGGGGGUUCAAGUCCUCUUGCCGGCACUGUUU
.........((.(((((.......))))).(((.(((((.......))))).))).))....... ( -16.50)
>Blich.0 926182 65 + 4222334/0-65
AUUGGUAGAGCAACUGACUUGUAAUCAGUAGGUUGGGGGUUCAAGUCCUCUGGCCGGCACUGUUU
.....(((.((.(((((.......))))).(((..((((.......))))..))).)).)))... ( -20.70)
>consensus
AUUGGUAGAGCAACUGACUUGUAAUCAGUAGGUUGGGGGUUCAAGUCCUCUGGCCGGCACCGUGU
.........((.(((((.......))))).(((((((((.......))))))))).))....... (-18.83 = -18.83 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:27:06 2006