Locus 127

Sequence ID Banth.0
Location 537,809 – 537,884
Length 75
Max. P 0.756616
window879 window880

overview

Window 9

Location 537,809 – 537,884
Length 75
Sequences 5
Columns 75
Reading direction reverse
Mean pairwise identity 78.93
Mean single sequence MFE -24.48
Consensus MFE -18.42
Energy contribution -18.62
Covariance contribution 0.20
Combinations/Pair 1.35
Mean z-score -1.56
Structure conservation index 0.75
SVM decision value 0.49
SVM RNA-class probability 0.756616
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 537809 75 + 5227293
AGUAAAUGGUGGCUCGGGACGGAAUCGAACCGCCGACACGAGGAUUUUCAGUCCUCUGCUCUACCGACUGAGCUA
......((((((.((((.......)))).))))))....((((((.....)))))).((((........)))).. ( -26.30)
>Bcere.0 610311 75 + 5224283
GAUAAAUGGUGGCUCGGGACGGAAUCGAACCGCCGACACGAGGAUUUUCAGUCCUCUGCUCUACCGACUGAGCUA
......((((((.((((.......)))).))))))....((((((.....)))))).((((........)))).. ( -26.30)
>Blich.0 926096 75 + 4222334
GGCAAAUGGUGGCUCGGGACGGAAUCGAACCGCCGACACACGGAUUUUCAGUCCGUUGCUCUACCAACUGAGCUA
......((((((.((((.......)))).))))))....((((((.....)))))).((((........)))).. ( -24.80)
>Bsubt.0 951471 75 + 4214630
CAUAGGUGGUGGCUCGGGACGGAAUCGAACCGCCGACACACGGAUUUUCAGUCCGUUGCUUUACCAACUGAGCUA
.....(((((((.((((.......)))).))))).))..((((((.....)))))).((((........)))).. ( -22.70)
>Bhalo.0 282432 72 + 4202352
CGAUGUAAAUGCGUCGAGAC-AAGUCGUA--GCCUACUCGACGAUGUUCCGCUCCUUGGUCUACCAAUUGAGCUA
.(((((....)))))(..((-(.((((.(--(....))))))..)))..)((((.((((....))))..)))).. ( -22.30)
>consensus
CGUAAAUGGUGGCUCGGGACGGAAUCGAACCGCCGACACGAGGAUUUUCAGUCCGUUGCUCUACCAACUGAGCUA
......((((((.((((.......)))).))))))....((((((.....)))))).((((........)))).. (-18.42 = -18.62 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 537,809 – 537,884
Length 75
Sequences 5
Columns 75
Reading direction reverse
Mean pairwise identity 78.93
Mean single sequence MFE -24.48
Consensus MFE -18.42
Energy contribution -18.62
Covariance contribution 0.20
Combinations/Pair 1.35
Mean z-score -1.56
Structure conservation index 0.75
SVM decision value 0.49
SVM RNA-class probability 0.756616
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 537809 75 + 5227293/0-75
AGUAAAUGGUGGCUCGGGACGGAAUCGAACCGCCGACACGAGGAUUUUCAGUCCUCUGCUCUACCGACUGAGCUA
......((((((.((((.......)))).))))))....((((((.....)))))).((((........)))).. ( -26.30)
>Bcere.0 610311 75 + 5224283/0-75
GAUAAAUGGUGGCUCGGGACGGAAUCGAACCGCCGACACGAGGAUUUUCAGUCCUCUGCUCUACCGACUGAGCUA
......((((((.((((.......)))).))))))....((((((.....)))))).((((........)))).. ( -26.30)
>Blich.0 926096 75 + 4222334/0-75
GGCAAAUGGUGGCUCGGGACGGAAUCGAACCGCCGACACACGGAUUUUCAGUCCGUUGCUCUACCAACUGAGCUA
......((((((.((((.......)))).))))))....((((((.....)))))).((((........)))).. ( -24.80)
>Bsubt.0 951471 75 + 4214630/0-75
CAUAGGUGGUGGCUCGGGACGGAAUCGAACCGCCGACACACGGAUUUUCAGUCCGUUGCUUUACCAACUGAGCUA
.....(((((((.((((.......)))).))))).))..((((((.....)))))).((((........)))).. ( -22.70)
>Bhalo.0 282432 72 + 4202352/0-75
CGAUGUAAAUGCGUCGAGAC-AAGUCGUA--GCCUACUCGACGAUGUUCCGCUCCUUGGUCUACCAAUUGAGCUA
.(((((....)))))(..((-(.((((.(--(....))))))..)))..)((((.((((....))))..)))).. ( -22.30)
>consensus
CGUAAAUGGUGGCUCGGGACGGAAUCGAACCGCCGACACGAGGAUUUUCAGUCCGUUGCUCUACCAACUGAGCUA
......((((((.((((.......)))).))))))....((((((.....)))))).((((........)))).. (-18.42 = -18.62 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:27:05 2006