Locus 121

Sequence ID Banth.0
Location 294,722 – 294,841
Length 119
Max. P 0.913887
window852 window853

overview

Window 2

Location 294,722 – 294,841
Length 119
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 87.62
Mean single sequence MFE -46.39
Consensus MFE -45.78
Energy contribution -42.12
Covariance contribution -3.66
Combinations/Pair 1.31
Mean z-score -1.35
Structure conservation index 0.99
SVM decision value 1.09
SVM RNA-class probability 0.913887
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 294722 119 + 5227293
AGUUUGGUGAUGAUGGCAGAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUCUAGCGCCGAUGGUAGUUGGGACCUUGUCCCUGUGAGAGUAGGACGUCGCCAAGCA
.(((((((((((((((..(((.((......)).))))))).((....((....))...((((((.((((((...))).)))(((((...)))))...)))))).)).))))))))))). ( -42.90)
>Bcere.0 335441 119 + 5224283
AGUUUGGUGAUGAUGGCAGAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUCUAGCGCCGAUGGUAGUUGGGACCUUGUCCCUGUGAGAGUAGGACGUCGCCAAGCA
.(((((((((((((((..(((.((......)).))))))).((....((....))...((((((.((((((...))).)))(((((...)))))...)))))).)).))))))))))). ( -42.90)
>Bsubt.0 165583 119 + 4214630
UGUUUGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUCGGGGGUUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCA
.(((((((((((...((((((((.........((((.......))))((....))....)))))).)).(((((....)))(((((...)))))..........)).))))))))))). ( -47.90)
>Blich.0 163002 119 + 4222334
AGUUUGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUGCCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCU
((((((((((((...((((((((.........((((.......))))((....))....)))))).)).((..........(((((...)))))..........)).)))))))))))) ( -46.55)
>Bhalo.0 56229 119 + 4202352
GGUUUGGUGGCGAUAGCGAAGAGGCCACACCCGUUCCCAUGCCGAACACGGUCGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGCGAGAGUAGGACGCUGCCAAGCG
.((((((..(((........((((((...(((((((.......))))((.((((....(((....)))..)))).))....)))))))))..(((((....))))).)))..)))))). ( -51.00)
>Bclau.0 939093 119 + 4303871
AGUCCGGUGACAAUGGCAAAGAGGUCACACCCGUUCCCAUGCCGAACACGGCCGUUAAGCUCUUUUGCGCCGAUGGUAGUUGGAGGCUUCCUCCCGCGAGAGUAGGACGUUGCCGGGCA
.((((((..((.((((....(.((.....)))....))))((((....)))).(((..((((((....(((...))).((.(((((...))))).))))))))..)))))..)))))). ( -47.10)
>consensus
AGUUUGGUGACGAUAGCAAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCA
.(((((((((((...((((((((.........((((.......))))((....))....)))))).)).((.((....(..(((((...)))))..)....)).)).))))))))))). (-45.78 = -42.12 +  -3.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 294,722 – 294,841
Length 119
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 87.62
Mean single sequence MFE -46.39
Consensus MFE -45.78
Energy contribution -42.12
Covariance contribution -3.66
Combinations/Pair 1.31
Mean z-score -1.35
Structure conservation index 0.99
SVM decision value 1.09
SVM RNA-class probability 0.913887
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 294722 119 + 5227293/0-119
AGUUUGGUGAUGAUGGCAGAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUCUAGCGCCGAUGGUAGUUGGGACCUUGUCCCUGUGAGAGUAGGACGUCGCCAAGCA
.(((((((((((((((..(((.((......)).))))))).((....((....))...((((((.((((((...))).)))(((((...)))))...)))))).)).))))))))))). ( -42.90)
>Bcere.0 335441 119 + 5224283/0-119
AGUUUGGUGAUGAUGGCAGAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUCUAGCGCCGAUGGUAGUUGGGACCUUGUCCCUGUGAGAGUAGGACGUCGCCAAGCA
.(((((((((((((((..(((.((......)).))))))).((....((....))...((((((.((((((...))).)))(((((...)))))...)))))).)).))))))))))). ( -42.90)
>Bsubt.0 165583 119 + 4214630/0-119
UGUUUGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUCGGGGGUUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCA
.(((((((((((...((((((((.........((((.......))))((....))....)))))).)).(((((....)))(((((...)))))..........)).))))))))))). ( -47.90)
>Blich.0 163002 119 + 4222334/0-119
AGUUUGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUGCCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCU
((((((((((((...((((((((.........((((.......))))((....))....)))))).)).((..........(((((...)))))..........)).)))))))))))) ( -46.55)
>Bhalo.0 56229 119 + 4202352/0-119
GGUUUGGUGGCGAUAGCGAAGAGGCCACACCCGUUCCCAUGCCGAACACGGUCGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGCGAGAGUAGGACGCUGCCAAGCG
.((((((..(((........((((((...(((((((.......))))((.((((....(((....)))..)))).))....)))))))))..(((((....))))).)))..)))))). ( -51.00)
>Bclau.0 939093 119 + 4303871/0-119
AGUCCGGUGACAAUGGCAAAGAGGUCACACCCGUUCCCAUGCCGAACACGGCCGUUAAGCUCUUUUGCGCCGAUGGUAGUUGGAGGCUUCCUCCCGCGAGAGUAGGACGUUGCCGGGCA
.((((((..((.((((....(.((.....)))....))))((((....)))).(((..((((((....(((...))).((.(((((...))))).))))))))..)))))..)))))). ( -47.10)
>consensus
AGUUUGGUGACGAUAGCAAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGGCUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCA
.(((((((((((...((((((((.........((((.......))))((....))....)))))).)).((.((....(..(((((...)))))..)....)).)).))))))))))). (-45.78 = -42.12 +  -3.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:26:45 2006