Locus 119

Sequence ID Bsubt.0
Location 160,774 – 160,864
Length 90
Max. P 0.518279
window824

overview

Window 4

Location 160,774 – 160,864
Length 90
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 59.08
Mean single sequence MFE -29.85
Consensus MFE -8.44
Energy contribution -8.25
Covariance contribution -0.19
Combinations/Pair 1.08
Mean z-score -3.64
Structure conservation index 0.28
SVM decision value -0.03
SVM RNA-class probability 0.518279
Prediction RNA

Download alignment: ClustalW | MAF

>Bsubt.0 160774 90 + 4214630/68-188
--------------CCUGUUAAUUCAUUUUUAUAAAU-------CGCACAGC--GAUGUGCG--UAGUCAG-----UCAAACUACUUUAUCGGAGAGUUUGAUCCUGGCUCAGGACGAAC
--------------((((...................-------((((((..--..))))))--.((((((-----(((((((.(((.....))))))))))..))))))))))...... ( -27.50)
>Blich.0 158178 90 + 4222334/68-188
--------------CCUGUUAAUUCAUUUUUAUAAAU-------CGCACAUUUGAGUGUGCG--UAGUCA------UUAUCAAACUUCAU-GGAGAGUUUGAUCCUGGCUCAGGACGAAC
--------------((((...................-------(((((((....)))))))--.(((((------..(((((((((...-...)))))))))..)))))))))...... ( -27.60)
>Banth.0 289956 77 + 5227293/68-188
--------------CGUGAAACGUCAAUUUUU---AU-------UUUA------GAUGC-----UAGACA--------AACUAACUUUAUUGGAGAGUUUGAUCCUGGCUCAGGAUGAAC
--------------...............(((---((-------(((.------((.((-----(((.((--------((((..((.....))..))))))...))))))))))))))). ( -16.20)
>Bhalo.0 1017770 120 + 4202352/68-188
GAGAUACAAGGUAUCUCGUCAAUUCACUUCAUUAUAUGAAGUGUCACAGGAAACAACAUCCUGUGAAACAUGAGCUUUAUCAAACUUUUAUGGAGAGUUUGAUCCUGGCUCAGGACGAAC
(((((((...)))))))(((....((((((((...))))))))((((((((.......))))))))....((((((..(((((((((((...)))))))))))...)))))).))).... ( -48.10)
>consensus
______________CCUGUUAAUUCAUUUUUAUAAAU_______CGCACA____AAUGUGCG__UAGACA______UUAACAAACUUUAUUGGAGAGUUUGAUCCUGGCUCAGGACGAAC
....................................................................................(((.....))).(((((.(((((...)))))))))) ( -8.44 =  -8.25 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:26:21 2006