Locus 118

Sequence ID Banth.0
Location 284,749 – 284,869
Length 120
Max. P 0.900096
window823

overview

Window 3

Location 284,749 – 284,869
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.42
Mean single sequence MFE -47.52
Consensus MFE -45.29
Energy contribution -41.48
Covariance contribution -3.81
Combinations/Pair 1.29
Mean z-score -1.66
Structure conservation index 0.95
SVM decision value 1.01
SVM RNA-class probability 0.900096
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 284749 120 + 5227293/0-120
AGUUUGGUGAUGAUGGCAGAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUCUAGCGCCGAUGGUAGUUGGGACCUUGUCCCUGUGAGAGUAGGACGUCGCCAAGCAA
.(((((((((((((((..(((.((......)).))))))).((....((....))...((((((.((((((...))).)))(((((...)))))...)))))).)).))))))))))).. ( -42.90)
>Bsubt.0 176190 120 + 4214630/0-120
UGUUUGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUCGGGGGUUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCAA
((((((((((((...((((((((.........((((.......))))((....))....)))))).)).(((((....)))(((((...)))))..........)).)))))))))))). ( -48.60)
>Bhalo.0 1023666 120 + 4202352/0-120
GGUUUGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUGCCGAACACGGUCGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGCCUUGCCCCUGCGAGAGUAGGACGCUGCCAAGCAA
.((((((..(((...((((((((.(.(((((.((((.......))))..))).))..).)))))).((.(((((....))))).))...)).(((((....))))).)))..)))))).. ( -50.60)
>Bclau.0 1446074 120 + 4303871/0-120
AGUCCGGUGACAAUGGCAAAGAGGUCACACCCGUUCCCAUGCCGAACACGGCCGUUAAGCUCUUUUGCGCCGAUGGUAGUUGGAGGCUUCCUCCUGCGAGAGUAGGACGUUGCCGGGCUU
(((((((..((.((((....(.((.....)))....))))(((...((..((((((..((......))...))))))...))..)))....((((((....)))))).))..))))))). ( -48.00)
>consensus
AGUUUGGUGACGAUAGCAAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUUGGGGCCUUCCCCCUGCGAGAGUAGGACGCCGCCAAGCAA
.(((((((((((...((((((((.(.((..((((((.......))..))))..))..).)))))).)).((.((....(..(((((...)))))..)....)).)).))))))))))).. (-45.29 = -41.48 +  -3.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:26:21 2006