Locus 115

Sequence ID Banth.0
Location 25,040 – 25,160
Length 120
Max. P 0.846609
window814

overview

Window 4

Location 25,040 – 25,160
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 85.67
Mean single sequence MFE -44.47
Consensus MFE -44.96
Energy contribution -40.97
Covariance contribution -3.99
Combinations/Pair 1.43
Mean z-score -1.26
Structure conservation index 1.01
SVM decision value 0.77
SVM RNA-class probability 0.846609
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 25040 120 + 5227293/200-320
GGGUCCUGCGCAACGGGACCCCGUGAACCUUGUCAGGUCCGGAAGGAAGCAGCAAUAAGCGGGUCUUCUCGUGUGCCGCAGGAGUGCCUGAACCGAGCUAACUGCUUAAGUAACGCUUAU
((((((((.....)))))))).(((....((((....(((....)))....))))(((((((.....((((.((....((((....)))).))))))....))))))).....))).... ( -45.10)
>Bcere.0 25041 120 + 5224283/200-320
GGGUCCUGCGCAACGGGACCCCGUGAACCUUGUCAGGUCCGGAAGGAAGCAGCAAUAAGCGGGUCUUCUCGUGUGCCGCAGGAGUGCCUGAACCGAGCUAACUGCUUAAGUAACGCUUAU
((((((((.....)))))))).(((....((((....(((....)))....))))(((((((.....((((.((....((((....)))).))))))....))))))).....))).... ( -45.10)
>Bsubt.0 26340 120 + 4214630/200-320
GGGUCCUGCGCAAUGGGAAUUCAUGAACCAUGUCAGGUCCGGAAGGAAGCAGCAUUAAGUGAAACCUCUCAUGUGCCGCAGGGUUGCCUGGGCCGAGCUAACUGCUUAAGUAACGCUUAG
((((((((((((((((((.(((((.....((((....(((....)))....))))...)))))...)))))).)).))))))(((((.(((((.(......).))))).))))))))).. ( -40.30)
>Blich.0 30602 120 + 4222334/200-320
GGGUCCUGCGCAAUGGGAAUCCAUGAACCAUGUCAGGUCCGGAAGGAAGCAGCAUUAAGUGGAACCUUCCAUGUGCCGCAGGGUUGCCUGGGCUGAGCUAACUGCUUAAGUAACGCUUAG
((((((((((((((((((.(((((.....((((....(((....)))....))))...)))))...)))))).)).))))))(((((.(((((..........))))).))))))))).. ( -43.00)
>Bhalo.0 46411 120 + 4202352/200-320
GGGUUCUACGCAACGAAAACCCACGAACCCUGUCAGGUCCGGAAGGAAGCAGCAGUAAGUGGCCCCUUUCGUGUGCCGUAGAGUCGCCUGGGCCGAGCUAACUGCUCAGGUAACGCCUAG
((((((((((((((((((..((((..((.((((....(((....))).))))..))..))))....)))))).)).))))))((..(((((((.(......).)))))))..)))))).. ( -48.60)
>Bclau.0 46887 120 + 4303871/200-320
GGGUUCUGCGCAACGGAAACCCAUGAACCCUGUCAGGUCCGGAAGGAAGCAGCAGUAAGUGGACCCUUCCGUGUGCCGCAGAGGUGCCUGGAUCGAGCUAACUGCUCAGGUAACGCUUGU
((((((((.....))).))))).......((((....(((....)))....))))((((((...(((((((.(..((.....))..).))))..((((.....)))))))...)))))). ( -44.70)
>consensus
GGGUCCUGCGCAACGGGAACCCAUGAACCAUGUCAGGUCCGGAAGGAAGCAGCAAUAAGUGGAACCUCUCGUGUGCCGCAGGGGUGCCUGGACCGAGCUAACUGCUUAAGUAACGCUUAG
((((((((((((((((((.(((((.....((((....(((....)))....))))...)))))...)))))).)).))))))...)))).....((((.....))))(((.....))).. (-44.96 = -40.97 +  -3.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:26:14 2006