Locus 114

Sequence ID Blich.0
Location 3,538,109 – 3,538,190
Length 81
Max. P 0.964716
window810 window811 window812 window813

overview

Window 0

Location 3,538,109 – 3,538,190
Length 81
Sequences 4
Columns 81
Reading direction forward
Mean pairwise identity 92.39
Mean single sequence MFE -31.42
Consensus MFE -31.58
Energy contribution -30.57
Covariance contribution -1.00
Combinations/Pair 1.10
Mean z-score -1.83
Structure conservation index 1.00
SVM decision value 1.57
SVM RNA-class probability 0.964716
Prediction RNA

Download alignment: ClustalW | MAF

>Blich.0 3538109 81 + 4222334
AAACGCGCUCGGAGGGAUUCGAACCCCCGGCAGACGUGGUACCGGAAACCACCGCUCUAUCCAGCUGAGCUACGAGCGCAC
....((((((((.((..((((...((.((.....)).))...))))..)).))((((.........))))...)))))).. ( -31.40)
>Bsubt.0 3544910 81 + 4214630
GGACGCGCUCGGAGGGAUUCGAACCCCCGACAGACGUGGUACCGGAAACCACCGCUCUAUCCAACUGAGCUACGAGCGCAU
....((((((((.(((.......)))))((.(((.(((((...(....).)))))))).))............)))))).. ( -30.10)
>Bcere.0 4843770 81 + 5224283
UGACGCGCCCAGAGGGAUUCGAACCCCCGGCAGACGUGGUACCGGAAACCACCGCUCUAUCCGACUGAGCUAUGGGCGCAU
....(((((((..(((........)))(((.(((.(((((...(....).))))))))..))).........))))))).. ( -32.10)
>Banth.0 4867356 81 + 5227293
UGACGCGCCCAGAGGGAUUCGAACCCCCGGCAGACGUGGUACCGGAAACCACCGCUCUAUCCGACUGAGCUAUGGGCGCAU
....(((((((..(((........)))(((.(((.(((((...(....).))))))))..))).........))))))).. ( -32.10)
>consensus
UGACGCGCCCAGAGGGAUUCGAACCCCCGGCAGACGUGGUACCGGAAACCACCGCUCUAUCCAACUGAGCUACGAGCGCAU
....(((((((..((..((((...((.((.....)).))...))))..))...((((.........))))..))))))).. (-31.58 = -30.57 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 3,538,109 – 3,538,190
Length 81
Sequences 4
Columns 81
Reading direction reverse
Mean pairwise identity 92.39
Mean single sequence MFE -33.98
Consensus MFE -33.86
Energy contribution -32.67
Covariance contribution -1.19
Combinations/Pair 1.13
Mean z-score -1.38
Structure conservation index 1.00
SVM decision value 0.48
SVM RNA-class probability 0.751967
Prediction RNA

Download alignment: ClustalW | MAF

>Blich.0 3538109 81 + 4222334
GUGCGCUCGUAGCUCAGCUGGAUAGAGCGGUGGUUUCCGGUACCACGUCUGCCGGGGGUUCGAAUCCCUCCGAGCGCGUUU
..(((((((((((...(((......))).(((((.......)))))).)))).(((((........))))))))))).... ( -32.70)
>Bsubt.0 3544910 81 + 4214630
AUGCGCUCGUAGCUCAGUUGGAUAGAGCGGUGGUUUCCGGUACCACGUCUGUCGGGGGUUCGAAUCCCUCCGAGCGCGUCC
(((((((((...........((((((.((.((((.......))))))))))))(((((.......)))))))))))))).. ( -34.40)
>Bcere.0 4843770 81 + 5224283
AUGCGCCCAUAGCUCAGUCGGAUAGAGCGGUGGUUUCCGGUACCACGUCUGCCGGGGGUUCGAAUCCCUCUGGGCGCGUCA
(((((((((..........((.((((.((.((((.......))))))))))))(((((.......)))))))))))))).. ( -34.40)
>Banth.0 4867356 81 + 5227293
AUGCGCCCAUAGCUCAGUCGGAUAGAGCGGUGGUUUCCGGUACCACGUCUGCCGGGGGUUCGAAUCCCUCUGGGCGCGUCA
(((((((((..........((.((((.((.((((.......))))))))))))(((((.......)))))))))))))).. ( -34.40)
>consensus
AUGCGCCCAUAGCUCAGUCGGAUAGAGCGGUGGUUUCCGGUACCACGUCUGCCGGGGGUUCGAAUCCCUCCGAGCGCGUCA
(((((((((..((((.........)))).(((((.......))))).......(((((.......)))))))))))))).. (-33.86 = -32.67 +  -1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 3,538,109 – 3,538,190
Length 81
Sequences 4
Columns 81
Reading direction forward
Mean pairwise identity 92.39
Mean single sequence MFE -31.42
Consensus MFE -31.58
Energy contribution -30.57
Covariance contribution -1.00
Combinations/Pair 1.10
Mean z-score -1.83
Structure conservation index 1.00
SVM decision value 1.57
SVM RNA-class probability 0.964716
Prediction RNA

Download alignment: ClustalW | MAF

>Blich.0 3538109 81 + 4222334/0-81
AAACGCGCUCGGAGGGAUUCGAACCCCCGGCAGACGUGGUACCGGAAACCACCGCUCUAUCCAGCUGAGCUACGAGCGCAC
....((((((((.((..((((...((.((.....)).))...))))..)).))((((.........))))...)))))).. ( -31.40)
>Bsubt.0 3544910 81 + 4214630/0-81
GGACGCGCUCGGAGGGAUUCGAACCCCCGACAGACGUGGUACCGGAAACCACCGCUCUAUCCAACUGAGCUACGAGCGCAU
....((((((((.(((.......)))))((.(((.(((((...(....).)))))))).))............)))))).. ( -30.10)
>Bcere.0 4843770 81 + 5224283/0-81
UGACGCGCCCAGAGGGAUUCGAACCCCCGGCAGACGUGGUACCGGAAACCACCGCUCUAUCCGACUGAGCUAUGGGCGCAU
....(((((((..(((........)))(((.(((.(((((...(....).))))))))..))).........))))))).. ( -32.10)
>Banth.0 4867356 81 + 5227293/0-81
UGACGCGCCCAGAGGGAUUCGAACCCCCGGCAGACGUGGUACCGGAAACCACCGCUCUAUCCGACUGAGCUAUGGGCGCAU
....(((((((..(((........)))(((.(((.(((((...(....).))))))))..))).........))))))).. ( -32.10)
>consensus
UGACGCGCCCAGAGGGAUUCGAACCCCCGGCAGACGUGGUACCGGAAACCACCGCUCUAUCCAACUGAGCUACGAGCGCAU
....(((((((..((..((((...((.((.....)).))...))))..))...((((.........))))..))))))).. (-31.58 = -30.57 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 3,538,109 – 3,538,190
Length 81
Sequences 4
Columns 81
Reading direction reverse
Mean pairwise identity 92.39
Mean single sequence MFE -33.98
Consensus MFE -33.86
Energy contribution -32.67
Covariance contribution -1.19
Combinations/Pair 1.13
Mean z-score -1.38
Structure conservation index 1.00
SVM decision value 0.48
SVM RNA-class probability 0.751967
Prediction RNA

Download alignment: ClustalW | MAF

>Blich.0 3538109 81 + 4222334/0-81
GUGCGCUCGUAGCUCAGCUGGAUAGAGCGGUGGUUUCCGGUACCACGUCUGCCGGGGGUUCGAAUCCCUCCGAGCGCGUUU
..(((((((((((...(((......))).(((((.......)))))).)))).(((((........))))))))))).... ( -32.70)
>Bsubt.0 3544910 81 + 4214630/0-81
AUGCGCUCGUAGCUCAGUUGGAUAGAGCGGUGGUUUCCGGUACCACGUCUGUCGGGGGUUCGAAUCCCUCCGAGCGCGUCC
(((((((((...........((((((.((.((((.......))))))))))))(((((.......)))))))))))))).. ( -34.40)
>Bcere.0 4843770 81 + 5224283/0-81
AUGCGCCCAUAGCUCAGUCGGAUAGAGCGGUGGUUUCCGGUACCACGUCUGCCGGGGGUUCGAAUCCCUCUGGGCGCGUCA
(((((((((..........((.((((.((.((((.......))))))))))))(((((.......)))))))))))))).. ( -34.40)
>Banth.0 4867356 81 + 5227293/0-81
AUGCGCCCAUAGCUCAGUCGGAUAGAGCGGUGGUUUCCGGUACCACGUCUGCCGGGGGUUCGAAUCCCUCUGGGCGCGUCA
(((((((((..........((.((((.((.((((.......))))))))))))(((((.......)))))))))))))).. ( -34.40)
>consensus
AUGCGCCCAUAGCUCAGUCGGAUAGAGCGGUGGUUUCCGGUACCACGUCUGCCGGGGGUUCGAAUCCCUCCGAGCGCGUCA
(((((((((..((((.........)))).(((((.......))))).......(((((.......)))))))))))))).. (-33.86 = -32.67 +  -1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:26:13 2006