Locus 11

Sequence ID Banth.0
Location 4,834,385 – 4,834,489
Length 104
Max. P 0.573744
window69

overview

Window 9

Location 4,834,385 – 4,834,489
Length 104
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 60.98
Mean single sequence MFE -31.38
Consensus MFE -8.66
Energy contribution -8.50
Covariance contribution -0.16
Combinations/Pair 1.68
Mean z-score -2.00
Structure conservation index 0.28
SVM decision value 0.08
SVM RNA-class probability 0.573744
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 4834385 104 + 5227293/160-280
AAA---------CAA---AACAAUCUUUCUUUAGCUGCUUAAUUGCACUA--AAGGUUCCUCC-CUCCAUCGUCCAUGUGGUAGGGUAAGGGACUCAAACUAAGUGGACUACGCC-GGAG
...---------...---..........((((((.(((......))))))--)))((((((((-((((((.......)))).))))..)))))).........(((.....))).-.... ( -27.40)
>Bcere.0 4827504 104 + 5224283/160-280
AAA---------CAA---AACAAUCUUUCUUUAGCUGCUUAAUUGCACUA--AAGGUUCCUCC-CUCCAUCGUCCAUGUGGUAGGGUAAGGGACUCAAACUAAGUGGACUACGCC-GGAG
...---------...---..........((((((.(((......))))))--)))((((((((-((((((.......)))).))))..)))))).........(((.....))).-.... ( -27.40)
>Bhalo.0 3652259 110 + 4202352/160-280
AAA---------GAAAACAACAACUUCGCAUUAGCUGCCUAAGCUAGCAAAUGCGGUUCCGCC-CUCCAUCGCCCAUGUGGUAGGUGUCGGGACUCACUUUUAGUGGGCUACGCCUCUCA
...---------..............((((((.(((((....)).))).))))))((((((((-((((((.......)))).))).).)))))).(((.....)))(((...)))..... ( -32.70)
>Bclau.0 3122951 105 + 4303871/160-280
AAA---------GAAAACAACAACUUCGCUCUAGCUGCAUAAGCUAA-----GCGGUCUCUCCUCUCCAUCGCCCAUGUGG-AGUGGCUGAGACUCAACUUUAGUGGGAUACGCCUUUCU
..(---------((((..........((((.(((((.....))))))-----)))(((((.((.((((((.......))))-)).))..))))).........(((.....))).))))) ( -32.10)
>Bsubt.0 3449741 113 + 4214630/160-280
AAAACUAACAGUUUUAACCAAAACGUAGCAUUAGCUGCCUAAUAAGCGCA--GCGAGCUCUUCCUGACAUUGCCUAUGUGUCUGUGAAGAGCACAU---CCAAGUAGGCUACGC--UUGC
(((((.....)))))........((((((....(((((((....)).)))--))..((((((((.(((((.......))))).).)))))))....---........)))))).--.... ( -37.30)
>Blich.0 3468997 106 + 4222334/160-280
AAA---------UCUAACCAGAACUUAGCACUAGCUGCCUAAUUAGCGCA--GCGAGCUCUUGCCCGCAUCGCCUAUGUGCCGGUUAAGAGCCCAUA-ACGAAGUAGGCUACGC--UUGC
...---------.............((((.((((((((((....)).)))--))(.(((((((((.((((.......)))).)).))))))).)...-......)))))))...--.... ( -31.40)
>consensus
AAA_________CAAAACAACAACUUAGCAUUAGCUGCCUAAUUAAACCA__GCGGUCCCUCC_CUCCAUCGCCCAUGUGGUAGGGAAAGGGACUCAAACUAAGUGGGCUACGCC_UUAC
.................................((.(((((.............(((((((((.((((((.......)))).)).)).))))))).........)))))...))...... ( -8.66 =  -8.50 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:15:57 2006