| Sequence ID | Bcere.0 |
|---|---|
| Location | 1,606,819 – 1,606,857 |
| Length | 38 |
| Max. P | 0.950394 |
| Location | 1,606,819 – 1,606,857 |
|---|---|
| Length | 38 |
| Sequences | 4 |
| Columns | 38 |
| Reading direction | forward |
| Mean pairwise identity | 93.86 |
| Mean single sequence MFE | -19.70 |
| Consensus MFE | -19.89 |
| Energy contribution | -19.70 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -6.43 |
| Structure conservation index | 1.01 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.919950 |
| Prediction | RNA |
| WARNING | Sequence 1 too short. |
| WARNING | Sequence 2 too short. |
| WARNING | Sequence 3 too short. |
| WARNING | Sequence 4 too short. |
Download alignment: ClustalW | MAF
>Bcere.0 1606819 38 - 5224283 AAAGGUGAUAAGGGGUUCGGCCUUUUAUCACCUUUUUU (((((((((((((((.....)))))))))))))))... ( -19.90) >Banth.0 1585227 38 - 5227293 AAAGGUGAUAAGGGGUUCGGCCUUUUAUCACCUUUUUU (((((((((((((((.....)))))))))))))))... ( -19.90) >Blich.0 1823121 38 + 4222334 AAAGGUGAUAAGGGGGUCUGCCUUUUAUCACCUUUUUU (((((((((((((((.....)))))))))))))))... ( -19.10) >Bsubt.0 1717974 38 + 4214630 AAAGGUGAUAAGAGGGACUGCCUUUUAUCACCUUUUUU (((((((((((((((.....)))))))))))))))... ( -19.90) >consensus AAAGGUGAUAAGGGGGUCGGCCUUUUAUCACCUUUUUU (((((((((((((((.....)))))))))))))))... (-19.89 = -19.70 + -0.19)
| Location | 1,606,819 – 1,606,857 |
|---|---|
| Length | 38 |
| Sequences | 4 |
| Columns | 38 |
| Reading direction | reverse |
| Mean pairwise identity | 93.86 |
| Mean single sequence MFE | -14.35 |
| Consensus MFE | -13.75 |
| Energy contribution | -13.75 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -5.40 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.950394 |
| Prediction | RNA |
| WARNING | Sequence 1 too short. |
| WARNING | Sequence 2 too short. |
| WARNING | Sequence 3 too short. |
| WARNING | Sequence 4 too short. |
Download alignment: ClustalW | MAF
>Bcere.0 1606819 38 - 5224283 AAAAAAGGUGAUAAAAGGCCGAACCCCUUAUCACCUUU ...(((((((((((..((.....))..))))))))))) ( -14.00) >Banth.0 1585227 38 - 5227293 AAAAAAGGUGAUAAAAGGCCGAACCCCUUAUCACCUUU ...(((((((((((..((.....))..))))))))))) ( -14.00) >Blich.0 1823121 38 + 4222334 AAAAAAGGUGAUAAAAGGCAGACCCCCUUAUCACCUUU ...(((((((((((..((.....))..))))))))))) ( -13.60) >Bsubt.0 1717974 38 + 4214630 AAAAAAGGUGAUAAAAGGCAGUCCCUCUUAUCACCUUU ...(((((((((((.(((.....))).))))))))))) ( -15.80) >consensus AAAAAAGGUGAUAAAAGGCAGAACCCCUUAUCACCUUU ...(((((((((((..((.....))..))))))))))) (-13.75 = -13.75 + 0.00)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:25:12 2006