Locus 1

Sequence ID Banth.0
Location 9,174 – 9,238
Length 64
Max. P 0.986235
window1 window2

overview

Window 1

Location 9,174 – 9,238
Length 64
RNAz 1.0pre Sequences 3
Columns 67
Reading direction forward
Mean pairwise identity 70.71
Mean single sequence MFE -15.23
Consensus MFE -7.46
Energy contribution -7.13
Covariance contribution -0.32
Combinations/Pair 1.31
Mean z-score -2.66
Structure conservation index 0.49
SVM decision value 2.03
SVM RNA-class probability 0.986235
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 9174 64 + 5227293
AAACUUGUUGACGAAAAUAAUAUACUAUGAUA-UAUUAUAAA-AGUCGCUGA-AACGCGAUGUUGAA
.......(..((....((((((((......))-))))))...-.(((((...-...)))))))..). ( -12.10)
>Bcere.0 9174 64 + 5224283
AAACUUGUUGACGAAAAUAAUAUACUAUGAUA-UAUUAUAAA-AGUCGCUGA-AACGCGAUGUUGAA
.......(..((....((((((((......))-))))))...-.(((((...-...)))))))..). ( -12.10)
>Bhalo.0 261736 67 + 4202352
AAAGUUGUUGACGUUGUGCCUUGGUUUUGAUAGUAUAAUUUACAGUCGUCAGCAAGACGACGUCAGA
.......((((((((((..((((.(..((((.(((.....))).))))..).)))))))))))))). ( -21.50)
>consensus
AAACUUGUUGACGAAAAUAAUAUACUAUGAUA_UAUUAUAAA_AGUCGCUGA_AACGCGAUGUUGAA
.......(((((.............((((((...))))))....(((((.......)))))))))). ( -7.46 =  -7.13 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 9,174 – 9,238
Length 64
Sequences 3
Columns 67
Reading direction forward
Mean pairwise identity 70.71
Mean single sequence MFE -15.23
Consensus MFE -7.46
Energy contribution -7.13
Covariance contribution -0.32
Combinations/Pair 1.31
Mean z-score -2.66
Structure conservation index 0.49
SVM decision value 2.03
SVM RNA-class probability 0.986235
Prediction RNA

Download alignment: ClustalW | MAF

>Banth.0 9174 64 + 5227293/0-67
AAACUUGUUGACGAAAAUAAUAUACUAUGAUA-UAUUAUAAA-AGUCGCUGA-AACGCGAUGUUGAA
.......(..((....((((((((......))-))))))...-.(((((...-...)))))))..). ( -12.10)
>Bcere.0 9174 64 + 5224283/0-67
AAACUUGUUGACGAAAAUAAUAUACUAUGAUA-UAUUAUAAA-AGUCGCUGA-AACGCGAUGUUGAA
.......(..((....((((((((......))-))))))...-.(((((...-...)))))))..). ( -12.10)
>Bhalo.0 261736 67 + 4202352/0-67
AAAGUUGUUGACGUUGUGCCUUGGUUUUGAUAGUAUAAUUUACAGUCGUCAGCAAGACGACGUCAGA
.......((((((((((..((((.(..((((.(((.....))).))))..).)))))))))))))). ( -21.50)
>consensus
AAACUUGUUGACGAAAAUAAUAUACUAUGAUA_UAUUAUAAA_AGUCGCUGA_AACGCGAUGUUGAA
.......(((((.............((((((...))))))....(((((.......)))))))))). ( -7.46 =  -7.13 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 17:14:48 2006