| Sequence ID | sy_sa.0 |
|---|---|
| Location | 2,407,362 – 2,407,481 |
| Length | 119 |
| Max. P | 0.998056 |
| Location | 2,407,362 – 2,407,476 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.90 |
| Mean single sequence MFE | -20.73 |
| Consensus MFE | -19.74 |
| Energy contribution | -19.30 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.95 |
| SVM decision value | 2.99 |
| SVM RNA-class probability | 0.998056 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_sa.0 2407362 114 + 2516575/240-360 UAAUUUAUCU-AACUCAUAUAAUCUGAAGGAUACGGCUUUAGAAGUUUCUACCAUGUUGCCAUUAACAACAUGACUAUGAGU----AACCAAUACAAUACACUAGCGA-UUCAAAUUGAG ..........-.(((((((...(((((((.......))))))).........(((((((.......)))))))..)))))))----......................-........... ( -20.30) >sy_ha.0 2598588 118 + 2685015/240-360 UAAUUUAUAU-CACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCACAAACGACAUGACUAUGAGUUCAGACUCAAUAC-AUAAAAGAGCAAGUUUUAUUUAAA ..........-.(((((((...(((((((.......))))))).........(((((((.......)))))))..)))))))...(.(((.....-......)))).............. ( -20.10) >sy_au.0 2349067 115 - 2809422/240-360 UAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCUUGAACGACAUGACUAUGAGU-----AACAACACAAUACUAGGAGUAGCUUCAGCCAUU ................................((((((...((((((.....(((((((.......)))))))(((...(((-----(.........))))...))))))))))))))). ( -21.80) >consensus UAAUUUAUAU_AACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCAUAAACGACAUGACUAUGAGU____AAACAAUACAAUACAAGAGCAAGUUUAAAUUAAA ............(((((((...(((((((.......))))))).........(((((((.......)))))))..)))))))...................................... (-19.74 = -19.30 + -0.44) # Strand winner: reverse (0.95)
| Location | 2,407,362 – 2,407,481 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.47 |
| Mean single sequence MFE | -22.33 |
| Consensus MFE | -19.71 |
| Energy contribution | -19.27 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.666087 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_sa.0 2407362 119 + 2516575/278-398 UAUUGAAAAUAUUGCCAAAAUUUGCUAUCAUCAGUUAAUAAUUUAUCU-AACUCAUAUAAUCUGAAGGAUACGGCUUUAGAAGUUUCUACCAUGUUGCCAUUAACAACAUGACUAUGAGU .(((((..(((..((........)))))..))))).............-.(((((((...(((((((.......))))))).........(((((((.......)))))))..))))))) ( -21.30) >sy_ha.0 2598588 119 + 2685015/278-398 UAUUGAAAAUAAAGCAAAAGUUUGCUAUUAUCGUUAAAUAAUUUAUAU-CACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCACAAACGACAUGACUAUGAGU ..((((..(((((((((....))))).))))..))))...........-.(((((((...(((((((.......))))))).........(((((((.......)))))))..))))))) ( -25.40) >sy_au.0 2349067 120 - 2809422/278-398 UAUUGAAAAAAUGCCGAAAAUUUGCUAUUAUCGUUAAAUAAUUUACAUAAACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCUUGAACGACAUGACUAUGAGU ..............(((.(((.....))).))).................(((((((...(((((((.......))))))).........(((((((.......)))))))..))))))) ( -20.30) >consensus UAUUGAAAAUAUAGCAAAAAUUUGCUAUUAUCGUUAAAUAAUUUAUAU_AACUCAUAUAAUCUAAAGAAUAUGGCUUUAGAAGUUUCUACCAUGUUGCCAUAAACGACAUGACUAUGAGU ..................................................(((((((...(((((((.......))))))).........(((((((.......)))))))..))))))) (-19.71 = -19.27 + -0.44) # Strand winner: reverse (0.65)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:57:11 2006