| Sequence ID | sy_sa.0 |
|---|---|
| Location | 2,280,446 – 2,280,563 |
| Length | 117 |
| Max. P | 0.569219 |
| Location | 2,280,446 – 2,280,563 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.39 |
| Mean single sequence MFE | -23.63 |
| Consensus MFE | -13.67 |
| Energy contribution | -13.67 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_sa.0 2280446 117 + 2516575/0-120 AAGGAAUGUUAAUUCCUAAGAUAAAAUACAAUUUUGACCUCACUGUUAUCUGCUCUUAACUUGUG-AAAG--CAAGUAAAUGUGGGAGGAAAUUCCGCUAAAACCACUAAAGGAGGAACA .((((((....))))))....................((((.((..............((((((.-...)--)))))....((((((.....))))))............)))))).... ( -27.20) >sy_au.0 2205312 99 - 2809422/0-120 GA------UUUAUUCAUAAGA------------UUAAUUCUUCUGUUGUCUGCUCUUAACUUGCAUAUAG--CAAGU-AAUGUGGGAGGAAAUUCCGCUAAAACCACUAAAGGAGGAACU ((------(.....((.((((------------.....)))).))..)))..(((((.((((((.....)--)))))-...((((((.....))))))............)))))..... ( -21.70) >sy_ha.0 2473927 106 + 2685015/0-120 UAAGAUUACUCAAACAUUAGA--------------CAUUCAUCUGUUAUCUGCUCUUAACUUGUGUUAGGCACAAGUAAGCGUGGGAGGAAAUUCCGCUAAAACCACUAAAGGAGGAACA ........(((.....((((.--------------................(((....(((((((.....))))))).)))((((((.....))))))........))))..)))..... ( -22.00) >consensus AA_GA_U_UUAAUUCAUAAGA____________UUAAUUCAUCUGUUAUCUGCUCUUAACUUGUGUAAAG__CAAGUAAAUGUGGGAGGAAAUUCCGCUAAAACCACUAAAGGAGGAACA ....................................................(((((.(((((.........)))))....((((((.....))))))............)))))..... (-13.67 = -13.67 + -0.00) # Strand winner: reverse (0.98)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:56:29 2006