| Sequence ID | sy_ha.0 |
|---|---|
| Location | 2,469,331 – 2,469,449 |
| Length | 118 |
| Max. P | 0.870107 |
| Location | 2,469,331 – 2,469,449 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.23 |
| Mean single sequence MFE | -26.20 |
| Consensus MFE | -13.45 |
| Energy contribution | -12.57 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.870107 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_ha.0 2469331 118 + 2685015/40-160 AGUGUGUACUUUUACGCGAAAAGAGUACGAUAAACAAGAAUA-AAUGUAGAAUCGAAAAUGGUGUCAUCAACUGUGUUGCCGUUUUCUUUUUGUCUUGUUA-UACGAUUUUUACGCGUAU ............(((((((((((.(((..(((((((((((..-...(......)((((((((((.(((.....))).))))))))))))))))).))))..-)))..))))).)))))). ( -29.40) >sy_au.0 2202437 119 - 2809422/40-160 AGUGUGUACUUUUACGUUAAAUAGAUAAGUUAAUUAAGAAUA-AAUAUAGAAUCGAAAAUGGUGUCAUCAUUAGUGUUGCCGUUUUCUUUUUGUCUUUUUAUUAAUAUGCUUAUGGUAUU ...(((......))).........((((((..(((((....(-((.((((((..((((((((((.(((.....))).)))))))))).)))))).)))...)))))..))))))...... ( -21.30) >sy_sa.0 2277488 105 + 2516575/40-160 AGUGUGUACUUUUACGU-------AUAAAUUAACAAUGUAUAUAAGGUGAAAUAGAAAAUGGUGUCAUGAGU-AUGCUACCGUUUUCUUUUUGUCUAAUUA-UA------UUGGGUGAUU ....(((((......))-------)))(((((.(((((((....(((..(((.(((((((((((.(((....-))).))))))))))))))..)))...))-))------)))..))))) ( -27.90) >consensus AGUGUGUACUUUUACGU_AAA___AUAAGUUAAAAAAGAAUA_AAUGUAGAAUCGAAAAUGGUGUCAUCAAU_GUGUUGCCGUUUUCUUUUUGUCUUAUUA_UA__AU__UUACGCGAUU .(((((......)))))................................(((..((((((((((.(((.....))).))))))))))..)))............................ (-13.45 = -12.57 + -0.88) # Strand winner: reverse (1.00)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:56:23 2006