Locus 8

Sequence ID sp_mu.0
Location 1,902,302 – 1,902,379
Length 77
Max. P 0.999197
window70 window71

overview

Window 0

Location 1,902,302 – 1,902,379
Length 77
Sequences 3
Columns 77
Reading direction reverse
Mean pairwise identity 76.09
Mean single sequence MFE -25.60
Consensus MFE -26.55
Energy contribution -22.90
Covariance contribution -3.65
Combinations/Pair 1.48
Mean z-score -4.22
Structure conservation index 1.04
SVM decision value 3.43
SVM RNA-class probability 0.999197
Prediction RNA

Download alignment: ClustalW | MAF

>sp_mu.0 1902302 77 + 2030921
AAUACUCAUCUUAGAUGAAUUGUGAUCUCGUUGCCUUUUGGGUUAGAUUGCAAGUUGAAGUCUGAGAGAGGCAAAAA
....(((.((((((((...(((..((((....(((.....))).))))..)))......)))))))))))....... ( -24.70)
>sp_ag.0 1830535 76 + 2160267
AAUACUCAUCUUAGAUCAAUUGUGGUCUUGUUGCC-GAAAGGUUAGGCUGCAAGUCGAAGUCUGAGAGAGGAAAAAA
....(((.((((((((...(((..((((....(((-....))).))))..)))......)))))))))))....... ( -28.70)
>sp_pn.0 2012638 76 + 2038615
AAUACUCAUUCUUGAUGAAUUGUGAAGCAGUUGCC-CUUGGGUCGUUUUGCGAGUUGAAGUCAAGAAGAGGAAAAAA
....(((.((((((((...(((..((((....(((-....))).))))..)))......)))))))))))....... ( -23.40)
>consensus
AAUACUCAUCUUAGAUGAAUUGUGAUCUAGUUGCC_CUUGGGUUAGAUUGCAAGUUGAAGUCUGAGAGAGGAAAAAA
....(((.((((((((...(((..((((....(((.....))).))))..)))......)))))))))))....... (-26.55 = -22.90 +  -3.65) 
# Strand winner: reverse (1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 1,902,302 – 1,902,379
Length 77
Sequences 3
Columns 77
Reading direction reverse
Mean pairwise identity 76.09
Mean single sequence MFE -25.60
Consensus MFE -26.55
Energy contribution -22.90
Covariance contribution -3.65
Combinations/Pair 1.48
Mean z-score -4.22
Structure conservation index 1.04
SVM decision value 3.43
SVM RNA-class probability 0.999197
Prediction RNA

Download alignment: ClustalW | MAF

>sp_mu.0 1902302 77 + 2030921/0-77
AAUACUCAUCUUAGAUGAAUUGUGAUCUCGUUGCCUUUUGGGUUAGAUUGCAAGUUGAAGUCUGAGAGAGGCAAAAA
....(((.((((((((...(((..((((....(((.....))).))))..)))......)))))))))))....... ( -24.70)
>sp_ag.0 1830535 76 + 2160267/0-77
AAUACUCAUCUUAGAUCAAUUGUGGUCUUGUUGCC-GAAAGGUUAGGCUGCAAGUCGAAGUCUGAGAGAGGAAAAAA
....(((.((((((((...(((..((((....(((-....))).))))..)))......)))))))))))....... ( -28.70)
>sp_pn.0 2012638 76 + 2038615/0-77
AAUACUCAUUCUUGAUGAAUUGUGAAGCAGUUGCC-CUUGGGUCGUUUUGCGAGUUGAAGUCAAGAAGAGGAAAAAA
....(((.((((((((...(((..((((....(((-....))).))))..)))......)))))))))))....... ( -23.40)
>consensus
AAUACUCAUCUUAGAUGAAUUGUGAUCUAGUUGCC_CUUGGGUUAGAUUGCAAGUUGAAGUCUGAGAGAGGAAAAAA
....(((.((((((((...(((..((((....(((.....))).))))..)))......)))))))))))....... (-26.55 = -22.90 +  -3.65) 
# Strand winner: reverse (1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:51:23 2006