| Sequence ID | sy_sa.0 |
|---|---|
| Location | 2,127,432 – 2,127,550 |
| Length | 118 |
| Max. P | 0.654934 |
| Location | 2,127,432 – 2,127,550 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 57.78 |
| Mean single sequence MFE | -21.97 |
| Consensus MFE | -11.92 |
| Energy contribution | -10.27 |
| Covariance contribution | -1.65 |
| Combinations/Pair | 1.61 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.654934 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_sa.0 2127432 118 + 2516575/0-120 UACUGGCAAAAAAUGAGCAAAUUGUAAAUCUUGCCAAU--CUUAAUUUGUCUUAAAGGAUUUUAAAUUUUUUUAAAUUUAUUGAAGGUGAUUGAGGACAAUCGCUGUAAAUGGAGGAUUU ....(((((...((..((.....))..)).)))))(((--((.........((((((((........)))))))).((((((...((((((((....))))))))...))))))))))). ( -21.60) >sy_au.0 2063722 111 - 2809422/0-120 UGACGAUUGAUAAUAACAAAUUUGUAUCAUUAGUUUGUAAAUUCACUUGUCUUAA-----UUUGAAACAAAUUA---UAACUGAAUGUGAUUGGUGACAAUCGCU-UAAAUGGAGGAUUU .(((((.(((.....(((((((.........)))))))....))).))))).(((-----((((...)))))))---.........(((((((....))))))).-.............. ( -23.40) >sy_ha.0 2266438 115 + 2685015/0-120 --CAGAAAAUAGACUUUUGAAAUGUUCUUAUUGUAAAUGUAUUC-UUUAUCUAAAGUUGUCUUACAAUAAUAAAAAUUUAC-AAAUGUGAUUGGAAACGAUCGCUAU-AAUGGAGGCUUU --(((((.......)))))....((..((((((((..((((...-(((((.....((((.....)))).)))))....)))-)...(((((((....))))))))))-)))))..))... ( -20.90) >consensus U_CAGAAAAAAAAUAACAAAAUUGUAAAUAUUGUAAAU__AUUCAUUUGUCUUAA____UUUUAAAAUAAUUUAAAUUUACUGAAUGUGAUUGGAGACAAUCGCU_UAAAUGGAGGAUUU ....(((((((.((((.....))))...)))))))...................................................(((((((....)))))))................ (-11.92 = -10.27 + -1.65) # Strand winner: reverse (0.99)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:55:50 2006