| Sequence ID | sy_ha.0 |
|---|---|
| Location | 2,138,377 – 2,138,421 |
| Length | 44 |
| Max. P | 0.933328 |
| Location | 2,138,377 – 2,138,421 |
|---|---|
| Length | 44 |
| Sequences | 3 |
| Columns | 44 |
| Reading direction | forward |
| Mean pairwise identity | 85.61 |
| Mean single sequence MFE | -5.31 |
| Consensus MFE | -5.10 |
| Energy contribution | -5.43 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.933328 |
| Prediction | RNA |
| WARNING | Sequence 1 too short. |
| WARNING | Sequence 2 too short. |
| WARNING | Sequence 3 too short. |
Download alignment: ClustalW | MAF
>sy_ha.0 2138377 44 + 2685015 ACUAUUCAUUAUAAAUAAAAAAGCCCGACAUUAACAUCGUCGGA ........................(((((.........))))). ( -6.80) >sy_au.0 1937260 44 - 2809422 AUUCUUAAUUAUAAAUAAAAAAGCCCGACAUUUACAUCGCCGGA ........................(((.............))). ( -1.82) >sy_sa.0 1976505 44 + 2516575 AUUAACUAUUAUAAAUAAAAAAGCCCGACUUUAACAUUGUCGGA ........................(((((.........))))). ( -7.30) >consensus AUUAUUAAUUAUAAAUAAAAAAGCCCGACAUUAACAUCGUCGGA ........................(((((.........))))). ( -5.10 = -5.43 + 0.33)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:55:41 2006