Locus 57

Sequence ID sy_ha.0
Location 1,793,573 – 1,793,672
Length 99
Max. P 0.859521
window258 window259

overview

Window 8

Location 1,793,573 – 1,793,672
Length 99
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 79.02
Mean single sequence MFE -15.63
Consensus MFE -10.78
Energy contribution -11.33
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -1.85
Structure conservation index 0.69
SVM decision value 0.82
SVM RNA-class probability 0.859521
Prediction RNA

Download alignment: ClustalW | MAF

>sy_ha.0 1793573 99 + 2685015
AUAGGCACCUCCUGACAAAUUACUAUUAAAA---UACACUAUGUUUAGUUUACAAUACGUCGAAAGGCUUGUGAACUAUAAACACAUAUUAAUAUCGAAAUU
.((((.....)))).................---.....(((((.((((((((((...(((....))))))))))))).....))))).............. ( -18.00)
>sy_au.0 1605502 101 - 2809422
AUAGGCACCUCCUGACAAAUUACUAUUAAAAAAAUACACUAUCCUUAGUUUACAAUACGUUGAAUGGCUUGUGAACUAUAAACAUAGAC-AAUAUCAAAAUU
.((((.....))))........................((((...((((((((((..(((...)))..)))))))))).....))))..-............ ( -13.80)
>sy_sa.0 1657614 101 + 2516575
AUAGGCACCUCCUGACAAUCACUUAUUCAAGUU-CACACUAUUAACAGUUUACAAUACGUUUUAACGCUUGUGAACUAUAAACACAUGUAUUUGUCUAAAUU
..(((.....)))(((((..((.......(((.-...)))......(((((((((..(((....))).)))))))))..........))..)))))...... ( -15.10)
>consensus
AUAGGCACCUCCUGACAAAUUACUAUUAAAA___UACACUAUCAUUAGUUUACAAUACGUUGAAAGGCUUGUGAACUAUAAACACAUAU_AAUAUCAAAAUU
.((((.....))))...............................((((((((((...(((....)))))))))))))........................ (-10.78 = -11.33 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 1,793,573 – 1,793,672
Length 99
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 79.02
Mean single sequence MFE -15.63
Consensus MFE -10.78
Energy contribution -11.33
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -1.85
Structure conservation index 0.69
SVM decision value 0.82
SVM RNA-class probability 0.859521
Prediction RNA

Download alignment: ClustalW | MAF

>sy_ha.0 1793573 99 + 2685015/0-102
AUAGGCACCUCCUGACAAAUUACUAUUAAAA---UACACUAUGUUUAGUUUACAAUACGUCGAAAGGCUUGUGAACUAUAAACACAUAUUAAUAUCGAAAUU
.((((.....)))).................---.....(((((.((((((((((...(((....))))))))))))).....))))).............. ( -18.00)
>sy_au.0 1605502 101 - 2809422/0-102
AUAGGCACCUCCUGACAAAUUACUAUUAAAAAAAUACACUAUCCUUAGUUUACAAUACGUUGAAUGGCUUGUGAACUAUAAACAUAGAC-AAUAUCAAAAUU
.((((.....))))........................((((...((((((((((..(((...)))..)))))))))).....))))..-............ ( -13.80)
>sy_sa.0 1657614 101 + 2516575/0-102
AUAGGCACCUCCUGACAAUCACUUAUUCAAGUU-CACACUAUUAACAGUUUACAAUACGUUUUAACGCUUGUGAACUAUAAACACAUGUAUUUGUCUAAAUU
..(((.....)))(((((..((.......(((.-...)))......(((((((((..(((....))).)))))))))..........))..)))))...... ( -15.10)
>consensus
AUAGGCACCUCCUGACAAAUUACUAUUAAAA___UACACUAUCAUUAGUUUACAAUACGUUGAAAGGCUUGUGAACUAUAAACACAUAU_AAUAUCAAAAUU
.((((.....))))...............................((((((((((...(((....)))))))))))))........................ (-10.78 = -11.33 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:54:10 2006