| Sequence ID | sy_ha.0 |
|---|---|
| Location | 1,708,820 – 1,708,940 |
| Length | 120 |
| Max. P | 0.999314 |
| Location | 1,708,820 – 1,708,940 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.50 |
| Mean single sequence MFE | -26.87 |
| Consensus MFE | -18.39 |
| Energy contribution | -17.40 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.96 |
| Structure conservation index | 0.68 |
| SVM decision value | 3.51 |
| SVM RNA-class probability | 0.999314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_ha.0 1708820 120 + 2685015/29-149 AAAUUAUUUUAGUCUAAACUGUGCCAAUUCAGACUUUGGUACAGUUUUUUCAUUUGCUUAUUCAAUGCCAUUAUCGAGUAUGAUAAAAUGAUAGAUGAUUUCUUAAAUAACUAAUAUAAU ..(((((.(((((..((((((((((((........))))))))))))..(((((((.(((((..(((((......).)))).....))))))))))))...........))))).))))) ( -26.90) >sy_au.0 1521197 118 - 2809422/29-149 UCACAUUUCUGGUGUAAACUGUACCGAGUCAGACUUUGGUACAGUUUUUUUAUUUGCUUAUUCAAUGCAUUAAAUGAGUAUGAUAAAAUGAUA-AUGAUUGUUU-AGUAACUUAUACUAU .........(((((((((((((((((((......)))))))))))).(((((((((((((((.((....)).)))))))).))))))).....-..........-.......))))))). ( -26.80) >sy_sa.0 1568120 119 + 2516575/29-149 UCAUAUUUUUA-UCUGAACUGUAUCAAAUCAGACUUUGGUACAGUUUUUUUAUUUGUUUAUUCAAUGCAACAAUCUAGUAUGAUAAAAUGGUAGAUAAUUGCAUCUAGAACCUAUUAUAA ...........-((((((((((((((((......))))))))))))).................((((((..(((((.(((......))).)))))..))))))..)))........... ( -26.90) >consensus UCAUAUUUUUAGUCUAAACUGUACCAAAUCAGACUUUGGUACAGUUUUUUUAUUUGCUUAUUCAAUGCAAUAAUCGAGUAUGAUAAAAUGAUAGAUGAUUGCUU_AAUAACUUAUAAUAU ...............(((((((((((((......)))))))))))))..(((((((.(((((..((((.........)))).....))))))))))))...................... (-18.39 = -17.40 + -0.99) # Strand winner: reverse (1.00)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:53:50 2006