| Sequence ID | sy_sa.0 |
|---|---|
| Location | 1,364,936 – 1,365,052 |
| Length | 116 |
| Max. P | 0.966201 |
| Location | 1,364,936 – 1,365,052 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.79 |
| Mean single sequence MFE | -21.94 |
| Consensus MFE | -16.55 |
| Energy contribution | -16.23 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.10 |
| Mean z-score | -3.12 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.966201 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_sa.0 1364936 116 + 2516575/0-120 UUGAAAAUGAUUAUCAAUACCAAAAUAAGAC-AUUCCCCCCACACAUAUUUCGUUCUUAUUUGGAUUGAUCAUUUUCAAAAAUAUCCCCUUUUAUAUGCCCGUAAAAGACUA---ACGUU ((((((((((...(((((.(((((.(((((.-......................))))))))))))))))))))))))).........(((((((......)))))))....---..... ( -22.70) >sy_ha.0 1528624 115 + 2685015/0-120 UUGAAAAUGAUUAUCAAUACC-GAAUAAGACAAUUCCCCCCACAUAUAUUUCGUUCUUA-AAGGAUUGGUCAUUUUCAAGUUAUUCCCCUUUUAUAUGCCCGUAAAAGACUA---ACGUU (((((((((((...((((.((-...(((((........................)))))-..)))))))))))))))))((((.....(((((((......)))))))..))---))... ( -19.56) >sy_au.0 1342639 116 - 2809422/0-120 UUGAAAAUGAUUAUCAAUACC-ACAUAGAACAUCCCCCCCCACA-ACGUUUCGUUCUUG-UUGGAUUGGUCAUUUUCAAAUAU-UCCCCUUUUAUAUGCCCGUAAAAGACAAUAUACGUU (((((((((((...((((.((-(((.(((((.............-.......)))))))-.))))))))))))))))))((((-(...(((((((......)))))))..)))))..... ( -23.55) >consensus UUGAAAAUGAUUAUCAAUACC_AAAUAAGACAAUUCCCCCCACA_AUAUUUCGUUCUUA_UUGGAUUGGUCAUUUUCAAAUAU_UCCCCUUUUAUAUGCCCGUAAAAGACUA___ACGUU (((((((((((...((((.((....(((((........................)))))...))))))))))))))))).........(((((((......)))))))............ (-16.55 = -16.23 + -0.33) # Strand winner: reverse (0.58)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:53:34 2006