Locus 43

Sequence ID sy_ha.0
Location 1,376,293 – 1,376,407
Length 114
Max. P 0.766278
window204

overview

Window 4

Location 1,376,293 – 1,376,407
Length 114
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 75.78
Mean single sequence MFE -19.70
Consensus MFE -17.63
Energy contribution -16.30
Covariance contribution -1.33
Combinations/Pair 1.22
Mean z-score -0.47
Structure conservation index 0.89
SVM decision value 0.52
SVM RNA-class probability 0.766278
Prediction RNA

Download alignment: ClustalW | MAF

>sy_ha.0 1376293 114 + 2685015/12-132
UAAU----AAUUUGG-AAUUGACCAUAAUAAAUUCAUAUAUUAUACUAAGUAAAGCAUAGUUGUAUCUUACUAUGCAAU-GACUUUAAAGUUCCGUUGAUAUUUGGAGGGAGGGAAAUAC
....----.......-.(((..((....((((.((((...((((.....)))).(((((((........))))))).))-)).))))....(((.((.(....).)).)))))..))).. ( -20.30)
>sy_au.0 1147341 111 - 2809422/12-132
AAAC----AAUUUACUAAUUGACCAUAAAUUACAGAUAUAUUAUACUUAUAAAUGCAUAGUU-----UUACUGUGCAAUUGACUAUAAAGUUCCGUUGAUAUUUGGAGGGAGGGAAAUAC
...(----((((....))))).((................(((((.(((....(((((((..-----...)))))))..))).)))))..((((.((.(....).)).))))))...... ( -19.30)
>sy_sa.0 1226709 115 + 2516575/12-132
AAAUCUGAAUUUUAGUAAUUGACCACAUUAAUCAGAUAUAUUAUACUAGAUUAUACAUGGUU----CAUACCGUGUAUU-GAUAAUAAAGUUUCGUUGAUAUUUGGAGGGAGGGAAAUAC
.................(((..((.(.....((((((((.....(((..((((((((((((.----...))))))))..-..))))..))).......))))))))...).))..))).. ( -19.50)
>consensus
AAAU____AAUUUAGUAAUUGACCAUAAUAAACAGAUAUAUUAUACUAAAUAAUGCAUAGUU____CUUACUGUGCAAU_GACUAUAAAGUUCCGUUGAUAUUUGGAGGGAGGGAAAUAC
.................(((..((..............................(((((((........)))))))...............(((.((.(....).)).)))))..))).. (-17.63 = -16.30 +  -1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:53:24 2006