Locus 38

Sequence ID sy_ha.0
Location 1,282,123 – 1,282,242
Length 119
Max. P 0.554053
window188 window189

overview

Window 8

Location 1,282,123 – 1,282,242
Length 119
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 81.51
Mean single sequence MFE -28.30
Consensus MFE -23.91
Energy contribution -24.03
Covariance contribution 0.12
Combinations/Pair 1.16
Mean z-score -1.17
Structure conservation index 0.84
SVM decision value 0.04
SVM RNA-class probability 0.554053
Prediction RNA

Download alignment: ClustalW | MAF

>sy_ha.0 1282123 119 + 2685015
UGUUGACUUAUAUGAUAUACACUGAUAUGAUAAUUAACGUUGAAUACGAAACGUACCAAGUAGAAACACCCGUUUCUCACCUGUAGCGACGCAUCAAGCAGUUGGCAGGUUAAUCAUGU
........................(((((((.....(((((........))))).....(.((((((....)))))))((((((..((((((.....)).))))))))))..))))))) ( -25.00)
>sy_au.0 1051649 119 - 2809422
UGUUGACUUAAAUGUGAAUUGUUGAUAUGAUUAAUAACGUUGAAUACGAAACGAACCAAGUAGAAGCACCCGCUUCUCACCUGUAGCGACGCAUAAAGCAGUUGGCAGGUUAAUCACAU
...........((((((.((((((((...))))))))((((........))))......(.((((((....)))))))((((((..((((((.....)).))))))))))...)))))) ( -28.40)
>sy_sa.0 1132937 119 + 2516575
UAUUGACUUGUAUAUGUAUUAUUGAUAAGAUAGGUAACGUUGAAUACGAAACGAACCAAGUAGAAGCUCCCGCUUCUCACCUGUUGCGACGCUAUAGGCAGUUGGCAGGUCUUAUAUAU
....(((((((.................(((((((..((((........))))......(.((((((....)))))))))))))).((((((.....)).)))))))))))........ ( -31.50)
>consensus
UGUUGACUUAUAUGUGAAUUAUUGAUAUGAUAAAUAACGUUGAAUACGAAACGAACCAAGUAGAAGCACCCGCUUCUCACCUGUAGCGACGCAUAAAGCAGUUGGCAGGUUAAUCAUAU
........................(((((((((....((((........))))......(.((((((....)))))))((((((..((((((.....)).))))))))))))))))))) (-23.91 = -24.03 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 1,282,123 – 1,282,242
Length 119
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 81.51
Mean single sequence MFE -28.30
Consensus MFE -23.91
Energy contribution -24.03
Covariance contribution 0.12
Combinations/Pair 1.16
Mean z-score -1.17
Structure conservation index 0.84
SVM decision value 0.04
SVM RNA-class probability 0.554053
Prediction RNA

Download alignment: ClustalW | MAF

>sy_ha.0 1282123 119 + 2685015/0-119
UGUUGACUUAUAUGAUAUACACUGAUAUGAUAAUUAACGUUGAAUACGAAACGUACCAAGUAGAAACACCCGUUUCUCACCUGUAGCGACGCAUCAAGCAGUUGGCAGGUUAAUCAUGU
........................(((((((.....(((((........))))).....(.((((((....)))))))((((((..((((((.....)).))))))))))..))))))) ( -25.00)
>sy_au.0 1051649 119 - 2809422/0-119
UGUUGACUUAAAUGUGAAUUGUUGAUAUGAUUAAUAACGUUGAAUACGAAACGAACCAAGUAGAAGCACCCGCUUCUCACCUGUAGCGACGCAUAAAGCAGUUGGCAGGUUAAUCACAU
...........((((((.((((((((...))))))))((((........))))......(.((((((....)))))))((((((..((((((.....)).))))))))))...)))))) ( -28.40)
>sy_sa.0 1132937 119 + 2516575/0-119
UAUUGACUUGUAUAUGUAUUAUUGAUAAGAUAGGUAACGUUGAAUACGAAACGAACCAAGUAGAAGCUCCCGCUUCUCACCUGUUGCGACGCUAUAGGCAGUUGGCAGGUCUUAUAUAU
....(((((((.................(((((((..((((........))))......(.((((((....)))))))))))))).((((((.....)).)))))))))))........ ( -31.50)
>consensus
UGUUGACUUAUAUGUGAAUUAUUGAUAUGAUAAAUAACGUUGAAUACGAAACGAACCAAGUAGAAGCACCCGCUUCUCACCUGUAGCGACGCAUAAAGCAGUUGGCAGGUUAAUCAUAU
........................(((((((((....((((........))))......(.((((((....)))))))((((((..((((((.....)).))))))))))))))))))) (-23.91 = -24.03 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:53:13 2006