| Sequence ID | sy_ha.0 |
|---|---|
| Location | 1,235,488 – 1,235,608 |
| Length | 120 |
| Max. P | 0.979029 |
| Location | 1,235,488 – 1,235,605 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.80 |
| Mean single sequence MFE | -26.75 |
| Consensus MFE | -24.27 |
| Energy contribution | -24.17 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.761989 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_ha.0 1235488 117 + 2685015/0-120 UAAGACUCCUCCUUU--UUCUUUUUUGUU-GUUAUGAAUAAACAAAAAAGAGUGUUGCAUGCCCAAUAGGAUAUGUUGUUUUAUGUGUCUUCACCUUAUAGCGUCAGUUACGCGACACGU ...............--.(((((((((((-..........)))))))))))(((((((.........(((((((((......))))))))).......((((....)))).))))))).. ( -28.00) >sy_au.0 1000889 119 - 2809422/0-120 UAAGACUCCUCCUUUAAUUCUUUUUUGUU-GUUAUGAAUAAACAAAAAAGAGUGUUGCAUGCUUACUAAGAUAUAUUGUUUUAUGUGUCUUCACCUUAUAGCGACAGUUACGUGACACGU ..................(((((((((((-..........)))))))))))((((..(.........(((((((((......))))))))).......((((....)))).)..)))).. ( -27.10) >sy_sa.0 1082958 118 + 2516575/0-120 UAAGACUCCUCCUUU--UUCUCUUUUGUUUGUUAUGAAAAAACAAAAAAGAGUGUUGCAUGCUUACUUGGAUAUAUUGUUUUAUGUGUCCUCGCCUCAUAGCAACGGUUACACGGCACGU ..........((...--.(((.((((((((.........)))))))).)))((((.((.((((.....((((((((......)))))))).........))))...)).))))))..... ( -25.14) >consensus UAAGACUCCUCCUUU__UUCUUUUUUGUU_GUUAUGAAUAAACAAAAAAGAGUGUUGCAUGCUUACUAGGAUAUAUUGUUUUAUGUGUCUUCACCUUAUAGCGACAGUUACGCGACACGU ..................(((((((((((.((.....)).)))))))))))(((((((..........((((((((......))))))))........((((....)))).))))))).. (-24.27 = -24.17 + -0.10)
| Location | 1,235,488 – 1,235,608 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.56 |
| Mean single sequence MFE | -33.57 |
| Consensus MFE | -31.40 |
| Energy contribution | -29.20 |
| Covariance contribution | -2.20 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.979029 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_ha.0 1235488 120 + 2685015/40-160 CAGUUGCAUAUCAAUAAGCUCUAUGUUGUUCCCGAUGAGGACGUGUCGCGUAACUGACGCUAUAAGGUGAAGACACAUAAAACAACAUAUCCUAUUGGGCAUGCAACACUCUUUUUUGUU ..(((((((.((((((.(...(((((((((.((.....))..(((((((((.....))))(((...)))..)))))....))))))))).).))))))..)))))))............. ( -32.70) >sy_au.0 1000889 120 - 2809422/40-160 CAGUUGUAUAUUAUUGAGCGCUAUGUUGUUCCCAAUGCGGACGUGUCACGUAACUGUCGCUAUAAGGUGAAGACACAUAAAACAAUAUAUCUUAGUAAGCAUGCAACACUCUUUUUUGUU ..(((((((.((((((((...(((((((((.((.....))..(((((.((....))(((((....))))).)))))....))))))))).))))))))..)))))))............. ( -30.80) >sy_sa.0 1082958 120 + 2516575/40-160 CAGUUGCGUAUUAGUUGGCUCUAUGUUGUUCCCAACGCGGACGUGCCGUGUAACCGUUGCUAUGAGGCGAGGACACAUAAAACAAUAUAUCCAAGUAAGCAUGCAACACUCUUUUUUGUU ..(((((((.(((.((((...(((((((((....((((((.....))))))..((.(((((....)))))))........))))))))).)))).)))..)))))))............. ( -37.20) >consensus CAGUUGCAUAUUAAUAAGCUCUAUGUUGUUCCCAAUGCGGACGUGUCGCGUAACUGUCGCUAUAAGGUGAAGACACAUAAAACAAUAUAUCCUAGUAAGCAUGCAACACUCUUUUUUGUU ..(((((((.((((((((...(((((((((.((.....))..(((((.((....)).((((....))))..)))))....))))))))).))))))))..)))))))............. (-31.40 = -29.20 + -2.20) # Strand winner: reverse (1.00)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:53:06 2006