Locus 32

Sequence ID	sy_ha.0
Location	1,168,417 – 1,168,514
Length	97
Max. P	0.969743

overview

Window 2

Location	1,168,417 – 1,168,514
Length	97
Sequences	3
Columns	100
Reading direction	forward
Mean pairwise identity	74.50
Mean single sequence MFE	-17.58
Consensus MFE	-12.35
Energy contribution	-13.47
Covariance contribution	1.12
Combinations/Pair	1.14
Mean z-score	-1.74
Structure conservation index	0.70
SVM decision value	1.65
SVM RNA-class probability	0.969743
Prediction	RNA
WARNING	Sequence 1: Base composition out of range.
WARNING	Sequence 2: Base composition out of range.
WARNING	Sequence 3: Base composition out of range.

Download alignment: ClustalW | MAF

>sy_ha.0 1168417 97 + 2685015
CAUUUUCCUUUCUAUCUAACUU-AGUUCUAAGUAAAGAUUUUAACAUACUUUAAUGUUAUAGUGUUUAAUGUAGUUCAACAAAAAU--AUAAAGAGGGGA
.....((((((((.....((((-(....)))))(((.(((.((((((......)))))).))).)))...................--....)))))))) ( -17.40)
>sy_au.0 942615 95 - 2809422
CAUUUUCCUUUCUAUAAAAAAAGAGUUCUAAGUACAGAUUUUAACAUAUUUUAAUGUUAUAGUGUUUAUUAUAGUUUGACAAAAA-----AGAGAGAGGA
.....((((((((..............(((((((.(.(((.((((((......)))))).))).).)))).)))...........-----..)))))))) ( -16.63)
>sy_sa.0 1035066 95 + 2516575
CAUUUUCCUUUCU-----AAAUUCAUUCUAGUUAAAGAUUUUAACAUAUUUUAAUGAUAUAGUGUUUAAAGUAAAAUAAGAAAUUUUGAUGUAGAAAGGA
.....((((((((-----(...(((((((.(((((.....))))).((((((((...........)))))))).....))))....)))..))))))))) ( -18.70)
>consensus
CAUUUUCCUUUCUAU__AAAAU_AGUUCUAAGUAAAGAUUUUAACAUAUUUUAAUGUUAUAGUGUUUAAUGUAGUUUAACAAAAAU__AUAAAGAGAGGA
.....((((((((...........((((((((((((.(((.((((((......)))))).))).)))))).)))...)))............)))))))) (-12.35 = -13.47 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:52:59 2006