| Sequence ID | sy_ha.0 |
|---|---|
| Location | 838,555 – 838,669 |
| Length | 114 |
| Max. P | 0.541795 |
| Location | 838,555 – 838,669 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.27 |
| Mean single sequence MFE | -16.63 |
| Consensus MFE | -13.72 |
| Energy contribution | -13.50 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.541795 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_ha.0 838555 114 + 2685015/40-160 AUUGUUUUAUAUCCACCCCAUGAUAAGCCCCGGAAACUUAUUGUGUUACAAGAUAUAUAAGCA-AAUUAUACAG-GAAU----AAAAUAAAUGAACAUUUACGCUUUGAAAAUCGUAACA .(((((((((.(((....((..(((((.........)))))..))..........(((((...-..)))))..)-))))----)))))))........(((((...(....).))))).. ( -16.70) >sy_au.0 519665 118 - 2809422/40-160 AUUGUUUUAUAUCCACCCCACGAUAAGCCCCGGAAACUUAUUGUGUUACAAGAUAUAUAAGCAGAAACGAACAA-CAGUUAACAAAAUAAAUGAAAUUAAACGUUUUAAAAAU-GAAACA .((((((((((((.....(((((((((.........)))))))))......)))))).)))))).(((......-..)))......................((((((....)-))))). ( -18.80) >sy_sa.0 716554 117 + 2516575/40-160 AUUGUUUUAUAUCA--CCCACGAUAAGCCCCGGAAUCUUAUUGUGUAACACGAUAUAGAAGCACGUAGAAACAAACAAUUAAUAAAAUAAAUGAAAUCUAA-GUUUUAAAAAGUAUAAAC .(((((((.((((.--.....)))).....(((..((((((((((...))))))).)))..).))..))))))).................((((((....-))))))............ ( -14.40) >consensus AUUGUUUUAUAUCCACCCCACGAUAAGCCCCGGAAACUUAUUGUGUUACAAGAUAUAUAAGCA_AAACAAACAA_CAAUUAA_AAAAUAAAUGAAAUUUAACGUUUUAAAAAU_GUAACA ..(((((((((((.....(((((((((.........)))))))))......)))))).)))))......................................................... (-13.72 = -13.50 + -0.22)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:52:00 2006