Locus 16

Sequence ID	sy_sa.0
Location	222,798 – 222,862
Length	64
Max. P	0.993214

overview

Window 4

Location	222,798 – 222,862
Length	64
Sequences	3
Columns	64
Reading direction	reverse
Mean pairwise identity	87.43
Mean single sequence MFE	-11.30
Consensus MFE	-10.85
Energy contribution	-10.63
Covariance contribution	-0.22
Combinations/Pair	1.07
Mean z-score	-2.75
Structure conservation index	0.96
SVM decision value	2.38
SVM RNA-class probability	0.993214
Prediction	RNA
WARNING	Sequence 1: Base composition out of range.
WARNING	Sequence 2: Base composition out of range.
WARNING	Sequence 3: Base composition out of range.

Download alignment: ClustalW | MAF

>sy_sa.0 222798 64 + 2516575
AAUUACCUCCGUUAAGUUUGUUAAAUUUUUAUUUAACGAAUUUUAUAGAUUUUAUGUUACCAUA
.......((..(.(((((((((((((....))))))))))))).)..))............... ( -10.30)
>sy_au.0 119904 63 - 2809422
AACAACCUCCGUUAAGUUUGUUAAAUUUUUAUUUAACGAAUUUUACAAA-CUUAUGUUAGCAUA
..........((.(((((((((((((....))))))))))))).))...-..((((....)))) ( -12.20)
>sy_ha.0 445243 63 + 2685015
AACUACCUCCGUUAAGUUUGUUAAAUUUUUAUUUAACGAAUUUUACAAA-ACUAGAUUAUCACA
..........((.(((((((((((((....))))))))))))).))...-.............. ( -11.40)
>consensus
AACUACCUCCGUUAAGUUUGUUAAAUUUUUAUUUAACGAAUUUUACAAA_AUUAUGUUACCAUA
..........((.(((((((((((((....))))))))))))).)).................. (-10.85 = -10.63 +  -0.22) 
# Strand winner: reverse (0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:51:45 2006