Locus 15

Sequence ID sy_sa.0
Location 50,066 – 50,162
Length 96
Max. P 0.659391
window92 window93

overview

Window 2

Location 50,066 – 50,162
Length 96
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 75.34
Mean single sequence MFE -17.97
Consensus MFE -9.94
Energy contribution -9.73
Covariance contribution -0.21
Combinations/Pair 1.26
Mean z-score -1.92
Structure conservation index 0.55
SVM decision value 0.26
SVM RNA-class probability 0.659391
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sa.0 50066 96 + 2516575
AAAUCACCUCAAAUUAUAUUUUUCGCAACC--UAUUUUUUAGUUUUAUUUGUGAUACGCUUCUGCUUAUCGGGUAGUAAUGAGGUUUUUAUACCCUAA
.....((((((..................(--((.....)))..((((((.(((((.((....)).))))).).)))))))))))............. ( -15.10)
>sy_ha.0 52274 96 + 2685015
AAUUCCUUUCUAAUUAUAUUAUGCGCAACC--UAUUUUUUAGUUUUAUUUGUGAUACGCUUCUGCGUAUCGGGAAAUAAUGAGGUUUUUUAAUGUUAA
...............((((((.....((((--(........(((...(((.((((((((....)))))))).)))..))).)))))...))))))... ( -17.90)
>sy_au.0 68050 98 + 2809422
AACACCCUCCAAAUUAUUAUCUCCUCAUACAGAAUUUUUUAGUUUUACUUAUGAUACGCCUCUGCGUAUCAGAUAAUGAUGCGGUUUUUAAUUAUUGA
........((..(((((((((.........((((((....)))))).....((((((((....)))))))))))))))))..)).............. ( -20.90)
>consensus
AAAUCCCUUCAAAUUAUAUUAUCCGCAACC__UAUUUUUUAGUUUUAUUUGUGAUACGCUUCUGCGUAUCGGGUAAUAAUGAGGUUUUUAAAUAUUAA
......((((.(((((.......................)))))((((((.((((((((....)))))))).).))))).)))).............. ( -9.94 =  -9.73 +  -0.21) 
# Strand winner: reverse (0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 50,066 – 50,162
Length 96
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 75.34
Mean single sequence MFE -17.97
Consensus MFE -9.94
Energy contribution -9.73
Covariance contribution -0.21
Combinations/Pair 1.26
Mean z-score -1.92
Structure conservation index 0.55
SVM decision value 0.26
SVM RNA-class probability 0.659391
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sa.0 50066 96 + 2516575/0-98
AAAUCACCUCAAAUUAUAUUUUUCGCAACC--UAUUUUUUAGUUUUAUUUGUGAUACGCUUCUGCUUAUCGGGUAGUAAUGAGGUUUUUAUACCCUAA
.....((((((..................(--((.....)))..((((((.(((((.((....)).))))).).)))))))))))............. ( -15.10)
>sy_ha.0 52274 96 + 2685015/0-98
AAUUCCUUUCUAAUUAUAUUAUGCGCAACC--UAUUUUUUAGUUUUAUUUGUGAUACGCUUCUGCGUAUCGGGAAAUAAUGAGGUUUUUUAAUGUUAA
...............((((((.....((((--(........(((...(((.((((((((....)))))))).)))..))).)))))...))))))... ( -17.90)
>sy_au.0 68050 98 + 2809422/0-98
AACACCCUCCAAAUUAUUAUCUCCUCAUACAGAAUUUUUUAGUUUUACUUAUGAUACGCCUCUGCGUAUCAGAUAAUGAUGCGGUUUUUAAUUAUUGA
........((..(((((((((.........((((((....)))))).....((((((((....)))))))))))))))))..)).............. ( -20.90)
>consensus
AAAUCCCUUCAAAUUAUAUUAUCCGCAACC__UAUUUUUUAGUUUUAUUUGUGAUACGCUUCUGCGUAUCGGGUAAUAAUGAGGUUUUUAAAUAUUAA
......((((.(((((.......................)))))((((((.((((((((....)))))))).).))))).)))).............. ( -9.94 =  -9.73 +  -0.21) 
# Strand winner: reverse (0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:51:44 2006