| Sequence ID | sp_pn.0 |
|---|---|
| Location | 1,690,609 – 1,690,650 |
| Length | 41 |
| Max. P | 0.999939 |
| Location | 1,690,609 – 1,690,650 |
|---|---|
| Length | 41 |
| Sequences | 3 |
| Columns | 41 |
| Reading direction | forward |
| Mean pairwise identity | 64.23 |
| Mean single sequence MFE | -13.13 |
| Consensus MFE | -14.98 |
| Energy contribution | -13.10 |
| Covariance contribution | -1.88 |
| Combinations/Pair | 1.50 |
| Mean z-score | -4.41 |
| Structure conservation index | 1.14 |
| SVM decision value | 3.00 |
| SVM RNA-class probability | 0.998090 |
| Prediction | RNA |
| WARNING | Sequence 1 too short. |
| WARNING | Sequence 2 too short. |
| WARNING | Sequence 3 too short. |
Download alignment: ClustalW | MAF
>sp_pn.0 1690609 41 + 2038615 CAAAAAAGAAAGGACGAAAUUUGUCCUUUCUCGAGCUUAGC ......(((((((((((...))))))))))).......... ( -12.70) >sp_mu.0 1564068 41 + 2030921 CACAAAAGAGAGAACCAAUCUGAUUCUCUCUCAUGCUUAGU ..((..((((((((.(.....).))))))))..))...... ( -10.20) >sp_ag.0 1517072 41 - 2160267 CAAAAAGGAGAAAACCAAUUUGGUUUUCUCCAGAAUAUAAU ......((((((((((.....)))))))))).......... ( -16.50) >consensus CAAAAAAGAGAGAACCAAUUUGGUUCUCUCUCGAGCUUAGU ......((((((((((.....)))))))))).......... (-14.98 = -13.10 + -1.88)
| Location | 1,690,609 – 1,690,650 |
|---|---|
| Length | 41 |
| Sequences | 3 |
| Columns | 41 |
| Reading direction | reverse |
| Mean pairwise identity | 64.23 |
| Mean single sequence MFE | -15.70 |
| Consensus MFE | -14.99 |
| Energy contribution | -13.33 |
| Covariance contribution | -1.66 |
| Combinations/Pair | 1.50 |
| Mean z-score | -4.79 |
| Structure conservation index | 0.95 |
| SVM decision value | 4.69 |
| SVM RNA-class probability | 0.999939 |
| Prediction | RNA |
| WARNING | Sequence 1 too short. |
| WARNING | Sequence 2 too short. |
| WARNING | Sequence 3 too short. |
Download alignment: ClustalW | MAF
>sp_pn.0 1690609 41 + 2038615 GCUAAGCUCGAGAAAGGACAAAUUUCGUCCUUUCUUUUUUG .........((((((((((.......))))))))))..... ( -13.10) >sp_mu.0 1564068 41 + 2030921 ACUAAGCAUGAGAGAGAAUCAGAUUGGUUCUCUCUUUUGUG .....(((.(((((((((((.....))))))))))).))). ( -18.20) >sp_ag.0 1517072 41 - 2160267 AUUAUAUUCUGGAGAAAACCAAAUUGGUUUUCUCCUUUUUG ..........((((((((((.....))))))))))...... ( -15.80) >consensus ACUAAGCUCGAGAGAGAACCAAAUUGGUUCUCUCUUUUUUG ..........((((((((((.....))))))))))...... (-14.99 = -13.33 + -1.66) # Strand winner: forward (0.69)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 19:02:23 2006