Locus 12

Sequence ID sp_pn.0
Location 448,003 – 448,071
Length 68
Max. P 0.998278
window82 window83

overview

Window 2

Location 448,003 – 448,071
Length 68
Sequences 3
Columns 68
Reading direction forward
Mean pairwise identity 87.25
Mean single sequence MFE -17.20
Consensus MFE -18.87
Energy contribution -17.10
Covariance contribution -1.77
Combinations/Pair 1.27
Mean z-score -1.46
Structure conservation index 1.10
SVM decision value 3.05
SVM RNA-class probability 0.998278
Prediction RNA

Download alignment: ClustalW | MAF

>sp_pn.0 448003 68 - 2038615
AUGCCCCCUACAGGGAUCGAACCUGUGACCCACGGAUUAAGAGUCCGCUGCUCUGCCAGCUGAGCUAA
........((((((.......)))))).....(((((.....)))))..((((........))))... ( -18.50)
>sp_ag.0 198031 68 - 2160267
AUGCCCCCUACAGGGCUCGAACCUGUGACCCAUAGAUUAAGAGUCUACUGCUCUACCAACUGAGCUAA
............((((((....(((((...))))).....))))))...((((........))))... ( -15.70)
>sp_mu.0 102709 68 - 2030921
AUCCUCCCUGUAGGGCUCGAACCUACGACCCAUGGAUUAAGAGUCCACUGCUCUACCAACUGAGCUAA
............(((.(((......)))))).(((((.....)))))..((((........))))... ( -17.40)
>consensus
AUGCCCCCUACAGGGCUCGAACCUGUGACCCAUGGAUUAAGAGUCCACUGCUCUACCAACUGAGCUAA
........((((((.......)))))).....(((((.....)))))..((((........))))... (-18.87 = -17.10 +  -1.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 448,003 – 448,071
Length 68
Sequences 3
Columns 68
Reading direction forward
Mean pairwise identity 87.25
Mean single sequence MFE -17.20
Consensus MFE -18.87
Energy contribution -17.10
Covariance contribution -1.77
Combinations/Pair 1.27
Mean z-score -1.46
Structure conservation index 1.10
SVM decision value 3.05
SVM RNA-class probability 0.998278
Prediction RNA

Download alignment: ClustalW | MAF

>sp_pn.0 448003 68 - 2038615/0-68
AUGCCCCCUACAGGGAUCGAACCUGUGACCCACGGAUUAAGAGUCCGCUGCUCUGCCAGCUGAGCUAA
........((((((.......)))))).....(((((.....)))))..((((........))))... ( -18.50)
>sp_ag.0 198031 68 - 2160267/0-68
AUGCCCCCUACAGGGCUCGAACCUGUGACCCAUAGAUUAAGAGUCUACUGCUCUACCAACUGAGCUAA
............((((((....(((((...))))).....))))))...((((........))))... ( -15.70)
>sp_mu.0 102709 68 - 2030921/0-68
AUCCUCCCUGUAGGGCUCGAACCUACGACCCAUGGAUUAAGAGUCCACUGCUCUACCAACUGAGCUAA
............(((.(((......)))))).(((((.....)))))..((((........))))... ( -17.40)
>consensus
AUGCCCCCUACAGGGCUCGAACCUGUGACCCAUGGAUUAAGAGUCCACUGCUCUACCAACUGAGCUAA
........((((((.......)))))).....(((((.....)))))..((((........))))... (-18.87 = -17.10 +  -1.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:51:34 2006