Locus 115

Sequence ID sy_ha.0
Location 2,500,462 – 2,500,534
Length 72
Max. P 0.977949
window686 window687

overview

Window 6

Location 2,500,462 – 2,500,534
Length 72
Sequences 5
Columns 72
Reading direction forward
Mean pairwise identity 95.56
Mean single sequence MFE -27.70
Consensus MFE -27.70
Energy contribution -27.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 1.00
SVM decision value 1.80
SVM RNA-class probability 0.977949
Prediction RNA

Download alignment: ClustalW | MAF

>sy_ha.0 2500462 72 + 2685015
GUGGAGACUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAAGCCC
..((((..((((((.......))))))..)))).((.(((...))).))((((........))))....... ( -27.70)
>sy_sa.0 2311633 72 + 2516575
GUGGAGACUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAUCUGAGCUAAGCCC
..((((..((((((.......))))))..)))).((.(((...))).))((((........))))....... ( -27.70)
>sp_pn.0 2021794 72 - 2038615
AUGGAGCCUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAAGGCC
..((((..((((((.......))))))..)))).((.(((...))).))((((........))))....... ( -27.70)
>sp_ag.0 1810016 72 - 2160267
AUGGAGCCUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAAGGCC
..((((..((((((.......))))))..)))).((.(((...))).))((((........))))....... ( -27.70)
>sy_au.0 2236770 72 - 2809422
GUGGAGACUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAAUUCU
..((((..((((((.......))))))..)))).((.(((...))).))((((........))))....... ( -27.70)
>consensus
GUGGAGACUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAAGCCC
..((((..((((((.......))))))..)))).((.(((...))).))((((........))))....... (-27.70 = -27.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 2,500,462 – 2,500,534
Length 72
Sequences 5
Columns 72
Reading direction forward
Mean pairwise identity 95.56
Mean single sequence MFE -27.70
Consensus MFE -27.70
Energy contribution -27.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 1.00
SVM decision value 1.80
SVM RNA-class probability 0.977949
Prediction RNA

Download alignment: ClustalW | MAF

>sy_ha.0 2500462 72 + 2685015/0-72
GUGGAGACUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAAGCCC
..((((..((((((.......))))))..)))).((.(((...))).))((((........))))....... ( -27.70)
>sy_sa.0 2311633 72 + 2516575/0-72
GUGGAGACUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAUCUGAGCUAAGCCC
..((((..((((((.......))))))..)))).((.(((...))).))((((........))))....... ( -27.70)
>sp_pn.0 2021794 72 - 2038615/0-72
AUGGAGCCUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAAGGCC
..((((..((((((.......))))))..)))).((.(((...))).))((((........))))....... ( -27.70)
>sp_ag.0 1810016 72 - 2160267/0-72
AUGGAGCCUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAAGGCC
..((((..((((((.......))))))..)))).((.(((...))).))((((........))))....... ( -27.70)
>sy_au.0 2236770 72 - 2809422/0-72
GUGGAGACUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAAUUCU
..((((..((((((.......))))))..)))).((.(((...))).))((((........))))....... ( -27.70)
>consensus
GUGGAGACUAGCGGGAUCGAACCGCUGACCUCCUGCGUGCAAAGCAGGCGCUCUCCCAGCUGAGCUAAGCCC
..((((..((((((.......))))))..)))).((.(((...))).))((((........))))....... (-27.70 = -27.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 19:00:08 2006