Locus 114

Sequence ID sy_ha.0
Location 976,161 – 976,280
Length 119
Max. P 0.912268
window685

overview

Window 5

Location 976,161 – 976,280
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 75.86
Mean single sequence MFE -39.50
Consensus MFE -32.50
Energy contribution -27.38
Covariance contribution -5.12
Combinations/Pair 1.52
Mean z-score -1.28
Structure conservation index 0.82
SVM decision value 1.08
SVM RNA-class probability 0.912268
Prediction RNA

Download alignment: ClustalW | MAF

>sy_ha.0 976161 119 + 2685015/4-124
CUUGUCUGGUGACAAUGGCAAGGAGGUCACACCUGUUCCCAUGCCGAACACAGAAGUUAAGCUCCUUAGCGCCGAUGGUAGUUGGAU-UUACGUUCCGCUAGAGUAGGACGUUGCCAGGC
...((((((..((..(((((.(((((.....)))....)).))))).........(((..((((..(((((((...)))....(((.-......)))))))))))..)))))..)))))) ( -40.40)
>sy_au.0 697293 119 - 2809422/4-124
UAUGUCUGGUGACUAUAGCAAGGAGGUCACACCUGUUCCCAUGCCGAACACAGAAGUUAAGCUCCUUAGCGUCGAUGGUAGUCGAAC-UUACGUUCCGCUAGAGUAGAACGUUGCCAGGC
...((((((..((....(((((((((..((....))..))..((..(((......)))..))))))).)).(((((....)))))..-....((((..(....)..))))))..)))))) ( -37.60)
>sy_sa.0 748546 119 + 2516575/4-124
AUUGUCUGGUGACAAUGGCAAGGAGGUCACACCUGUUCCCAUGCCGAACACAGAAGUUAAGCUCCUUAGCGCCGAUGGUAGUCGGAC-UUACGUUCCGCAAGAGUAGGACGUUGCCAGGC
...((((((..((..((((......))))..(((((((...(((.((((......((((((...)))))).(((((....)))))..-....)))).))).)))))))..))..)))))) ( -41.30)
>sp_pn.0 19915 119 + 2038615/4-124
G-AGUUAAGUGACGAUAGCCUAGGAGAUACACCUGUACCCAUGCCGAACACAGAAGUUAAGCCCUAGAACGCCGGAAGUAGUUGGGGGUUGCCCCCUGUGAGAUAGGGAAGUCGCUUAGC
.-.((((((((((.....((((((.(.(((....))))))........(((((......((((((..(((..(....)..))).)))))).....)))))...))))...)))))))))) ( -38.80)
>sp_ag.0 353373 120 + 2160267/4-124
AUAGUUAAGUGAUAAUUGCCUAGGAGAUACACCUGUUCUCAUGCCGAACACAGAAGUUAAGCCCUAGAACGCCGGAAGUAGUUGGGGGUUGCCCCCUGUGAGAUAAGGUAGUCGCUUAGC
...((((((((((...(((((..((((.((....))))))........(((((......((((((..(((..(....)..))).)))))).....))))).....))))))))))))))) ( -39.40)
>consensus
AUUGUCUGGUGACAAUAGCAAGGAGGUCACACCUGUUCCCAUGCCGAACACAGAAGUUAAGCUCCUUAGCGCCGAUGGUAGUUGGAC_UUACGUUCCGCGAGAGUAGGACGUUGCCAGGC
...((((((((((....(((((((((..((....))..))..((..(((......)))..))))))).)).((.......(..((((.....))))..).......))..)))))))))) (-32.50 = -27.38 +  -5.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 19:00:07 2006